Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00551 ATGACAATGATGAACAACAACAACAACAACAACAACGTTGGAGAATTTGGGGACACCACTCTGACCAAGGTTTTTGTTGGGGGCTTAGCTTGGGAGACTCCGAAGGATGCCCTCAAAGACCACTTTGAGAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCCGATAAGCATACTGGCAAATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCTGAGGCTGCCAAGAAGGCTTGCGAGGACTCAGCAACTCTCATTATCAATGGCCGTCGTGCAAACTGCAATCTTGCTTTCCTAGGTGCTCGTCGCCCAAGGTCTTCTTCCAATGCTTCACCACCTCCACAACCACAAGTCGCAGGAGGATCAAATGGTGGAGTAATGAAGAACAACGCACCAAGTACACCAGCCAATCAGGTGCAACCATATTATTACCCAATGAGGACAACTGCTCTGCCATTCCATAATAACACTCTTCCTTTCTATGGGTACACGCCTACCTACATTGTGCAGACGGACATAAACTACAATTACAATCAGAAGCTGTGCTATGGCAGCGGTGGGGCCTACATGAATGGGCAGCAGCAGTTGTCCCATGTGTACCCTAGGCAGGCTATTGTGGGTGGCAACACATTGATGCCAATATACCCTCTCTATCAGTATCATCATCCAACGGAGACCATAGGGGTACCTGCTCACAACTTTTATCAAACGGCACCGTGGGCTCCAATGACCATCATGTCCAAGCCATCCTCTATCATTCCTCACACAGGTACAGTTGGCACAGGTGAGTACTTTAAAAGGGTTGTCTGA 813 0.4785 MTMMNNNNNNNNVGEFGDTTLTKVFVGGLAWETPKDALKDHFEKYGEILEAVIISDKHTGKSKGYGFVTFKEAEAAKKACEDSATLIINGRRANCNLAFLGARRPRSSSNASPPPQPQVAGGSNGGVMKNNAPSTPANQVQPYYYPMRTTALPFHNNTLPFYGYTPTYIVQTDINYNYNQKLCYGSGGAYMNGQQQLSHVYPRQAIVGGNTLMPIYPLYQYHHPTETIGVPAHNFYQTAPWAPMTIMSKPSSIIPHTGTVGTGEYFKRVV 270
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00551 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Pumo7g00551 270 PANTHER BOULE-RELATED 11 251 - -
Pumo7g00551 270 MobiDBLite consensus disorder prediction 104 133 - -
Pumo7g00551 270 SUPERFAMILY RNA-binding domain, RBD 18 125 IPR035979 GO:0003676
Pumo7g00551 270 Gene3D - 3 112 IPR012677 -
Pumo7g00551 270 SMART rrm1_1 23 96 IPR000504 GO:0003723
Pumo7g00551 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 92 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo7g00551 Pumo-Chr7 8596218 8598307 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00551 18 168 C2H2 Transcription Factor Family AT2G19380 28.477 7.28e-15 72.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00551 - - gmx:100780861 449.514