Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00550 ATGGTGTTGGATCCAAGGCTGGTGTTGGTGCTGTTCATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGTTGCTTCTCTAAAGGCTTTGTTTCAAAGTATGAACTCACCATCCCAGCTAAATTGGAATGGTGATGATCCTTGTGGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATTAAGTTACCTGGTCGTTCACTTTCCGGAACTTTGGGTTACCAGCTAGAATTGTCATCTGTGACAAACTTAGACTTGAGTAACAACAATCTTGGTGGCACCATACCATACCCACTTCCTCCTAATCTGCAATACTTAAATCTTGCTAATAATAATTTCAATGGGGCAATCCCTTATTCTCTTTCTGATAAGACTTCGCTTATAGTCCTGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTTCAAAAGCTTTCCTCCCTCTCTACATTGGATCTCTCGTTCAATTCTTTGACAGGTGACCTGCCTCAGACTATGAGCTCACTTTCTAGCATAAGCACCATGTATCTGCAAAACAACCAGTTTACAGGCACCATCGATGTCCTTGCTAATCTGCCTCTTGAAACTTTGAGTGTGGGAAACAATCATTTTACAGGCTGGATACCAGAACAATTGAAAAACATAATACAAAAGGATGGTAATGCATGGAGCTCGGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAGCAGTAACAAGAAACCGAAATCACAAATCTGGCGGACATAGCCCATCAGATGCTGGCTCAAGTGACAGTGGAGGCAAAAAATCTGGTATAGGAGGTGGTGGCATTGCTGGAATAGTGATCTCAATCTTGGTTGTTGGGGCAATAGTAGCATTCTTTCTGGTGAAGAGAAGATCCAAAAAGTCGTTTAATGATGTTGAAAAGTTTGACAATCAGCCCTTGGCTCAACATGAAGTGCACGAAATGAATTCTGTGCAAACTTCATCTGTAATTGACTTAAAGACATTTGATGCACCTGCGGCCCCAATAAGCCTTAAACCTCCACCTTTTGATCGTCACAAATCATTTGATGAGGATGAGTTTTCAAACATACCCGCTATAGTCAATAAGCCCACTAAAGTCAAGAAGACCGTAACAGCTCCTGTAAATGTAAAATCGTATTCTATAGCTGATCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTCTTGGTGAGGGGTCTTTTGGACGCGTGTACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCCGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGAAGATTTTGTAGAACTAGTTTCAAACATATCCCATTTGCATCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAACACCTACTAGTTTATGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACCTACCTGATGAGTATAGTAAACCATTGATATGGAATTCACGTGTGAAGATTGCTTTGGGGATTGCACGCGCTTTAGAGTACCTACATGAAGTTTGTTCACCATCTATTGTTCATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATCTTAATCCTCATCTTTCAGACAGTGGGTTGGCAAGCTATATTCCAAATGCAAACCAGGTATTGAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGCTTGTCTGGTCATTATACTCTTAAGAGTGATGTTTATAGCTTCGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCGAGGTCCGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCTTTGGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCTGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGCAAGAGGACGTTTGGAACTGATCAAGGAGGATCCAACAGAGGAGGTGATGATAACCAAGATACACAAGACATGTAA 2142 0.4272 MVLDPRLVLVLFISTCILAINGDTDPNDVASLKALFQSMNSPSQLNWNGDDPCGQSWQGITCSGNRVTEIKLPGRSLSGTLGYQLELSSVTNLDLSNNNLGGTIPYPLPPNLQYLNLANNNFNGAIPYSLSDKTSLIVLNLGHNQLQQALNVDFQKLSSLSTLDLSFNSLTGDLPQTMSSLSSISTMYLQNNQFTGTIDVLANLPLETLSVGNNHFTGWIPEQLKNIIQKDGNAWSSGPAPPPPPGTPPAVTRNRNHKSGGHSPSDAGSSDSGGKKSGIGGGGIAGIVISILVVGAIVAFFLVKRRSKKSFNDVEKFDNQPLAQHEVHEMNSVQTSSVIDLKTFDAPAAPISLKPPPFDRHKSFDEDEFSNIPAIVNKPTKVKKTVTAPVNVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSEDFVELVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGIARALEYLHEVCSPSIVHKNIKSANILLDTDLNPHLSDSGLASYIPNANQVLNNNAGSGYEAPEVGLSGHYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQALVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGGSNRGGDDNQDTQDM 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00550 713 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Pumo7g00550 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 484 - -
Pumo7g00550 713 Pfam Leucine rich repeat 110 170 IPR001611 GO:0005515
Pumo7g00550 713 MobiDBLite consensus disorder prediction 231 276 - -
Pumo7g00550 713 Pfam Protein tyrosine and serine/threonine kinase 409 679 IPR001245 GO:0004672|GO:0006468
Pumo7g00550 713 Gene3D Ribonuclease Inhibitor 135 235 IPR032675 -
Pumo7g00550 713 PRINTS Leucine-rich repeat signature 90 103 - -
Pumo7g00550 713 PRINTS Leucine-rich repeat signature 157 170 - -
Pumo7g00550 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 684 IPR046959 -
Pumo7g00550 713 MobiDBLite consensus disorder prediction 690 706 - -
Pumo7g00550 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 485 693 - -
Pumo7g00550 713 Gene3D Phosphorylase Kinase; domain 1 371 484 - -
Pumo7g00550 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 246 - -
Pumo7g00550 713 ProSiteProfiles Protein kinase domain profile. 407 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g00550 713 MobiDBLite consensus disorder prediction 690 713 - -
Pumo7g00550 713 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Pumo7g00550 713 MobiDBLite consensus disorder prediction 252 272 - -
Pumo7g00550 713 Gene3D Ribonuclease Inhibitor 27 134 IPR032675 -
Pumo7g00550 713 Gene3D Transferase(Phosphotransferase) domain 1 486 700 - -
Pumo7g00550 713 SUPERFAMILY L domain-like 28 227 - -
Pumo7g00550 713 SUPERFAMILY Protein kinase-like (PK-like) 384 679 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00550 Pumo-Chr7 8566110 8573592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00550 8 704 Strubbelig Receptor Gene Family AT1G53730 65.830 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pumo7g00550 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00550 - - gmx:100780323 1242.25