Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00546 ATGGCTACCATTCTCACCTTCTTCACAGCCATTGCTTTTGTGGCTCAATCATTTCACAAGTACATGATCCAGAGTCTGCACAAACTGTACAAGCATTATGGATATGCTGCTGAAGTGAAGGACAATGAAGAGCATGAAAGTGATTATTGTTCAGTGTGTTTAAGCCAAATTTGTAAAGGGGAAAAAGCTAGGTCTCTTCCAGTATGCAACCACAGATATCATGCTGATTGTATTGGTGCTTGGTTGAAGAATCATACCACATGCCCTCTTTGTAGGCACAAAATCACTGACCATATCCCCCCAAAACATAAACAGGTGAAGAGCTTAGGAGAATCTATGTTCAATCTCATGCAGAGTTTCTCTGATCTACTGGTAGCTATTCTCTACATGATGCTTCCATCTAGCATCACTGAGAGTTTCCCTTTGGTTCATTGA 435 0.4092 MATILTFFTAIAFVAQSFHKYMIQSLHKLYKHYGYAAEVKDNEEHESDYCSVCLSQICKGEKARSLPVCNHRYHADCIGAWLKNHTTCPLCRHKITDHIPPKHKQVKSLGESMFNLMQSFSDLLVAILYMMLPSSITESFPLVH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00546 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 98 IPR013083 -
Pumo7g00546 144 SUPERFAMILY RING/U-box 40 98 - -
Pumo7g00546 144 CDD RING-H2_PA-TM-RING 50 92 - -
Pumo7g00546 144 FunFam RING-H2 finger protein ATL60 13 98 - -
Pumo7g00546 144 Pfam Ring finger domain 49 92 IPR001841 -
Pumo7g00546 144 SMART ring_2 50 91 IPR001841 -
Pumo7g00546 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 96 IPR044675 -
Pumo7g00546 144 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00546 Pumo-Chr7 8528969 8529949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00546 50 95 C3H Transcription Factor Family AT1G53820 56.522 2.11e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00546 - - gmx:100500375 273.478