Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00545 ATGGGTGGAAGTGCAACCTCAGTGTCAAGTGACAGCAGCACATTGGGTGAACCTGACACAATTGAGATCACAGGGAAGATCATGGTGGTGGCCATAATATTCCTCTTCATGGTGGTTGTCTTTGTTCTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAGCATGGAGGAAAACACCACCCCTCAGCCCCGCCACCGGCGCCGCCGCCGCCGGAGGTTTGTCTTCGCCCCCGGCCAAGACCCGGTGATCTATGAGACTCACCAAGTTGGGCTTGACCCTTCAGTTCTTAAGTCCCTGACAGTGTTGGTGTTCCAACCTGAGGACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGATATTGTGCAAGGTGAAAAGTTAAGGCTTTTGCCCAAATGCAATCATGGGTTTCATGTTGATTGCATTGACATGTGGTTCCATTCACACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGCTTTTGAATCCTCTAAAATTGAAGAGAATAATGCCTCAGGAAATGGTGATTTATCAACACCACATGAAGAGAATTCAGGTGCTGTGAGTGGTTTGGAGCCTTCAAATTTTCCCACAAATGTGCTGGTTTGGGGGAACCAGACACAAGTTAGTTCTTTTGGGGTTTCCTTGGAAGAAAAAGAAGAAGAAGAAGGTACTTCTCATCAGTCTCAGCAACCACCTTGTTCTCCATCACCTACACCATCTTCTTCAGATGGTGGTAATGTTAATGGTAGTAGGTGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTTTGTCACCTTCTGGGAGTAGGTGTGCTGAAGAGGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTCAAGAGGCTTTTGAGCAGGGACAAGAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCACAGAGCTAG 963 0.4683 MGGSATSVSSDSSTLGEPDTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKWFWWSMEENTTPQPRHRRRRRRRFVFAPGQDPVIYETHQVGLDPSVLKSLTVLVFQPEDFKEGLECAVCLSDIVQGEKLRLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFESSKIEENNASGNGDLSTPHEENSGAVSGLEPSNFPTNVLVWGNQTQVSSFGVSLEEKEEEEGTSHQSQQPPCSPSPTPSSSDGGNVNGSRCHGMLVIDIPSECTSSSLSPSGSRCAEEEVKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAQS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00545 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 175 - -
Pumo7g00545 320 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Pumo7g00545 320 Pfam Ring finger domain 115 158 IPR001841 -
Pumo7g00545 320 SMART ring_2 116 157 IPR001841 -
Pumo7g00545 320 FunFam RING-H2 finger protein ATL3 84 163 - -
Pumo7g00545 320 MobiDBLite consensus disorder prediction 214 287 - -
Pumo7g00545 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 166 IPR013083 -
Pumo7g00545 320 SUPERFAMILY RING/U-box 96 164 - -
Pumo7g00545 320 CDD RING-H2_EL5-like 115 158 - -
Pumo7g00545 320 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00545 Pumo-Chr7 8518663 8520185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00545 10 303 C3H Transcription Factor Family AT1G53820 42.188 2.22e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00545 - - gmx:100775523 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00545 7 8518663 8520185 Pumo7g00545 7 8518663 8520185 ECH