Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00540 ATGGATACGATCAAGTCATTCAAGGGCTACGGCAAAGTGGACGAGTTGGAGCAGCAAGCCTATCAGAAGAAGACACGTAAGCGCCTCATAATCATCGCAGTCTCTTCCATCGTTCTTATTGCGGTGATCATCGCCGCGGTCGCAGGGGTTGTCATACACAAGCGCAACACGTCATCATCGCCCTCATCTGACTCGCCCCCGCAACCTGAGTTAGCCCCGGCCGCGTCACTCAAAGCGGTTTGCGAAGTGACTCAGTACCCTAACTCGTGCTTCTCCGCAATCTCATCGTTACCCGAATCCAACACTACTGATCCGGAGCTCCTCTTCAAGCTCTCGCTCCGCGTCGCCATTGACGAGCTCTCCAAGCTCTCGAGCTTCCCTTCGAAGCTTCGCGCCAATGCGGAGCACGACGCGCGTCTCCAGAAAGCGATTGATGTCTGCGGGAATGTTATCGGCGACGCGCTGGACCGGCTCAACGACTCGATCTCCGCGCTCGGAGGCGGCGCCGTCGCCGCCGGAAAGATTATGTCTCCGGCGAGCGTCAAGGACGTGGAGACGTGGCTCAGCGCCGCGCTCACGGACCAGGACACGTGCCTCGACGCGCTCGGCGAGCTGAACTCCACCGCCGCGCGCGGCGCGCTGCGCGAGATCGAAATCGCCATGAGGAACTCCACGGAGTTCGCGAGCAACAGTTTGGCCATCGTCACGAGGGTCCTAGGGCTGCTGTCGCAGTTCGAGTCGCCGATTCACCACCGGCGGCTGCTAGGGTTTCCGGCGTGGCTCGGCGCGGCGGAGCGGAGGCTGCTGCAGGCGAACGGCACCGAAACGACGCCGGACGCTGTGGTGGCGAGTGACGGTAGCGGGCAGTTCACCACGATCGGTGCAGCGCTGAAGTTGGTGAAGAAGAAGAGCGAGAAGATATTCGTGGTGTACGTGAAGAAAGGGGAATACGTAGAGAACATCGATTTGGATAAGAACACGTGGAATGTGTTCATCTACGGCGATGGCAAGGACAAAACCATCGTCACCGGTAGCCGGAACTTCATCGACGGCACGCCGACTTTCGAAACCGCCACCTTCGGATTCGTTGTTATATTGCTATGGAAAAGAACAGCTTTGATGGAAAAGCATGTGGCATGTGCTTTAGTGCGTCTTGCGAGCCACATGGTTTCAAATAATACTGGGCCTGGAGCTGACGTGTCCCAGAGGGTCAAATGGGCCGGTTATAAGCCCACTCTCACGGACGCGTACGCAGGGAAGTTCACTGTGCAGTCCTTTATCCAAGGCACTGAGTGGTTGCCCAATGCTGCTGTGCAGTTTGATTCCACCTTATCTAGTGCGAGTGTTGTGGCTGTTGAGAGTGGAGATGCGGTGGTCGTTGGCATATTTTGCGTCAGTGGTGGAGGGACCGTCAGTCACCAGAGGCGTCATCGGGAGTGTCGTTGGTCATCGGAGGTGTCGTTGGGGTCGTCGTCGATCGTCGGAGGTGTCGTCGTCTGGGGTGTCGTCGATCGTCGGAGGATACATGAGAAGGAGGGACGCTGTGGAGATGTTCTGATGAGGGAGAGTTCATGA 1575 0.5771 MDTIKSFKGYGKVDELEQQAYQKKTRKRLIIIAVSSIVLIAVIIAAVAGVVIHKRNTSSSPSSDSPPQPELAPAASLKAVCEVTQYPNSCFSAISSLPESNTTDPELLFKLSLRVAIDELSKLSSFPSKLRANAEHDARLQKAIDVCGNVIGDALDRLNDSISALGGGAVAAGKIMSPASVKDVETWLSAALTDQDTCLDALGELNSTAARGALREIEIAMRNSTEFASNSLAIVTRVLGLLSQFESPIHHRRLLGFPAWLGAAERRLLQANGTETTPDAVVASDGSGQFTTIGAALKLVKKKSEKIFVVYVKKGEYVENIDLDKNTWNVFIYGDGKDKTIVTGSRNFIDGTPTFETATFGFVVILLWKRTALMEKHVACALVRLASHMVSNNTGPGADVSQRVKWAGYKPTLTDAYAGKFTVQSFIQGTEWLPNAAVQFDSTLSSASVVAVESGDAVVVGIFCVSGGGTVSHQRRHRECRWSSEVSLGSSSIVGGVVVWGVVDRRRIHEKEGRCGDVLMRESS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00540 524 FunFam Pectinesterase 73 239 - -
Pumo7g00540 524 Pfam Pectinesterase 391 429 IPR000070 GO:0030599|GO:0042545
Pumo7g00540 524 Pfam Pectinesterase 279 363 IPR000070 GO:0030599|GO:0042545
Pumo7g00540 524 Pfam Plant invertase/pectin methylesterase inhibitor 77 234 IPR006501 GO:0004857
Pumo7g00540 524 SMART PMEI_2 72 234 IPR006501 GO:0004857
Pumo7g00540 524 NCBIfam pectinesterase inhibitor domain 61 235 IPR006501 GO:0004857
Pumo7g00540 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 238 IPR035513 -
Pumo7g00540 524 Gene3D - 273 364 IPR012334 -
Pumo7g00540 524 Gene3D - 383 444 IPR012334 -
Pumo7g00540 524 PANTHER PECTINESTERASE 392 434 - -
Pumo7g00540 524 SUPERFAMILY Pectin lyase-like 277 441 IPR011050 -
Pumo7g00540 524 CDD PMEI-like_3 79 237 - -
Pumo7g00540 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 238 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00540 Pumo-Chr7 8460590 8465042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00540 393 438 Carbohydrate Esterase AT1G53840 60.870 1.21e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00540 - - gmx:100777128 607.446