Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00531 ATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAACTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTATAGCCTCTTTTGAGAAAGATGATGCTGAACGCTTACTTTTCTTCTATCAAAACTGTGAGAAAGATAGCTGTACAAACAAAAATAATATAATTTTTAGCAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGGAAAAGGTGTGAACCAAACCAAGGGGCTAGCCCTGGTCTTCATGAAGGTGTTTATCCAGGGCAGGGTGGTGTTCGTAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGTGAATGGGATTAGCACGCCATTAACTCCTGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATACCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGATGGTTTTGATGGTGCTCATGTAGAGGCTAATTTGCCACTTGTTGCCCCTACGAAGCGTAGTAGTATTGGATCAACATCTGCAACACACAGAAAATCATTTTCAAGCGCAGCTCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTGAAGAAACATGGTTGCGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACACAATAGACTGATTCCTCAAGGAGGGCTTACCGAGTTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACTGGTGTTGGAAATACTCTCAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGCGCAGCTGGTGATTGGGTAAATTGTGGCATATGTGGTGAATGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTTGGCGCGTTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCTAATGGGTATTCTCAAGGGTCAATGTCTTCACGACCCCTTTGA 1221 0.4275 MKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNCEKDSCTNKNNIIFSSPPGWLKPPPPTRKRCEPNQGASPGLHEGVYPGQGGVRKVNEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGAHVEANLPLVAPTKRSSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRPL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00531 406 MobiDBLite consensus disorder prediction 176 196 - -
Pumo7g00531 406 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 403 IPR042293 -
Pumo7g00531 406 SUPERFAMILY ARID-like 220 335 IPR036431 GO:0003677
Pumo7g00531 406 CDD PHD_ARID4_like 330 381 - -
Pumo7g00531 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 382 IPR013083 -
Pumo7g00531 406 ProSiteProfiles ARID domain profile. 220 324 IPR001606 GO:0003677
Pumo7g00531 406 CDD ARID 222 320 - -
Pumo7g00531 406 SMART bright_3 221 325 IPR001606 GO:0003677
Pumo7g00531 406 SMART ARID_2 217 320 - -
Pumo7g00531 406 MobiDBLite consensus disorder prediction 70 103 - -
Pumo7g00531 406 SUPERFAMILY FYVE/PHD zinc finger 316 384 IPR011011 -
Pumo7g00531 406 Pfam ARID/BRIGHT DNA binding domain 223 320 IPR001606 GO:0003677
Pumo7g00531 406 Gene3D - 213 325 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00531 Pumo-Chr7 8362088 8365464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00531 1 395 ARID Transcription Factor Family AT3G43240 64.141 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo7g00531 ARID 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00531 - - gmx:100816540 811.986