Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00528 ATGAAGGCTTCTTCTGGAGCAAATGCTGCAACAACGCCAAGAAGAAAGAGGAGAAGAAGGATTGAGATCAAAGAAGTTGAGCAGACAAACAGGCGTCACGTGACCTTCTCCAAACGCAAACTAGGGTTATTCAACAAACTCACTGAACTCTCTCTTCTATGCCAAGTGGAAACTGCTTTGATCGTTACCTCCCAAAACGGGAAGCTCTATTCCTGTGGCTACCCCGACACCGATGCGGTCGTTCACCGCTACCTTGCCGGAGGGCCTCCCCAAAGGTTGGACCGTGAAAGTAAAAGGAAGCAGCAAGAGGCAATTGAAACCCTAAGGCTAGAATACGAGGCCACCCAAAATCACTTGAAAGAAGAACAAAAGCGTTTACAAGAAATAAAAGACACACAACAAAATAATAGTGTGTGCTTTCCTTCTTGGTGGAGTCTCTCTACCGAGGGTATGGGTTTGGAGAATCTTGAACAGTTCAAGACCTCATTGGAACGTTTGAAGTTTAACCTAGTTGGGGCGCTGCAAGAGAAGCAGTACCTAAGTTCAGTTCCACCAATGCCATATGCTTTAGTTCCACCAATGCCATCTGCTATGGTTCCACCAATTCCACATACTACAGTTCCACCAAACATGTCGCACTTGACTCAGCTTTTCAGTGGAAATCAAGTTCAGGAATATTGGAGTGGTTCTTCTAGCACTGGTTCGGCATTTCCTGCAAGTGATTTTGGCCATTATTGA 738 0.4553 MKASSGANAATTPRRKRRRRIEIKEVEQTNRRHVTFSKRKLGLFNKLTELSLLCQVETALIVTSQNGKLYSCGYPDTDAVVHRYLAGGPPQRLDRESKRKQQEAIETLRLEYEATQNHLKEEQKRLQEIKDTQQNNSVCFPSWWSLSTEGMGLENLEQFKTSLERLKFNLVGALQEKQYLSSVPPMPYALVPPMPSAMVPPIPHTTVPPNMSHLTQLFSGNQVQEYWSGSSSTGSAFPASDFGHY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00528 245 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pumo7g00528 245 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pumo7g00528 245 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pumo7g00528 245 SUPERFAMILY SRF-like 17 92 IPR036879 GO:0003677|GO:0046983
Pumo7g00528 245 PANTHER MADS BOX PROTEIN 18 170 - -
Pumo7g00528 245 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pumo7g00528 245 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pumo7g00528 245 Coils Coil 98 136 - -
Pumo7g00528 245 Gene3D - 29 111 IPR036879 GO:0003677|GO:0046983
Pumo7g00528 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Pumo7g00528 245 FunFam Agamous-like MADS-box protein AGL62 28 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00528 Pumo-Chr7 8350117 8351435 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00528 14 167 Type I MADS-box Gene Family AT5G60440 32.500 1.27e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g00528 SRF-TF 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00528 - - gmx:100817750 295.819