Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00526 ATGGCTTCTTCTTATGGAGCAAACAAAGTAACAACGCAAAACACAAGGAGGGGAAAGATTGAGATCAAAGAAGTTGAACAAACAAACAGGCGTTACGTGACTTTCTCCAAACGCAAACTAGGGTTATTCAACAAACTCACTGAGCTCTCTCTTCTATGCCAAGTGGAAACCGCTTTGCTCATTACCTCCCAAAACCGGAAGCTCTATTCTTGCGGCTACCCGGACCCCGAAGCCGTCGTTCGGCGCTACCTCTCCGGAGGGCCTCCCCTCCGGCGCAACCGTGCAAGCAAGAAGGAGCAGCAAGAGTTTGTTGAGAAGCAAAGGCTGGAATATGAAGCCGTTCATAATCAGTTGAAAGAAGAGAAAAAGCGTCTGCAAGAAATCAAAGAGACGCAGAATAATGGTTTCTGCTTTCCCCCTTGGTGGAATCTCCCCGCTGAGGGTAAAAATTTGGAGAATCTTGAACAGTTCAAGACCTCATTGGAGCGTTTGAAGTTTAACCTAGTTGGCGCGCTGCAAGAGAAGCAGATGAATTCGGTTCCATCAATAATGCAACCTGCTATAGTTCCACCAATGCCACTTTCTATGGTACCACCAATGTCATCTACTATGGTTCCACCAATGCCATATACTATGGTTCCTCCACCAATGCCATCTACTATGGTTCCACCAATGCCATATACTATGGTTCCTCCACCAATGCCATCTACTATGGTTCCACCAATGCCATATACTATGGTTCCTCCACCAATGCCATCTACTATGGTTCCACCAATTCCACGTACTATAGTTCCACCGCAACAGTTTTCAAACATGCTGCTCATGAGTGCTCAAAGTTTCAGTGGAAATCAAGTTCAAGATTATTGGACGAGTGGTGCTAGTACTAGTTCGACGTTTCCTTCAAGTGGTTTTGGCCATTAG 921 0.4582 MASSYGANKVTTQNTRRGKIEIKEVEQTNRRYVTFSKRKLGLFNKLTELSLLCQVETALLITSQNRKLYSCGYPDPEAVVRRYLSGGPPLRRNRASKKEQQEFVEKQRLEYEAVHNQLKEEKKRLQEIKETQNNGFCFPPWWNLPAEGKNLENLEQFKTSLERLKFNLVGALQEKQMNSVPSIMQPAIVPPMPLSMVPPMSSTMVPPMPYTMVPPPMPSTMVPPMPYTMVPPPMPSTMVPPMPYTMVPPPMPSTMVPPIPRTIVPPQQFSNMLLMSAQSFSGNQVQDYWTSGASTSSTFPSSGFGH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00526 306 Gene3D - 28 113 IPR036879 GO:0003677|GO:0046983
Pumo7g00526 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Pumo7g00526 306 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Pumo7g00526 306 CDD bZIP 90 127 - -
Pumo7g00526 306 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Pumo7g00526 306 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Pumo7g00526 306 PANTHER MADS BOX PROTEIN 17 168 - -
Pumo7g00526 306 Coils Coil 101 135 - -
Pumo7g00526 306 FunFam Agamous-like MADS-box protein AGL62 27 111 - -
Pumo7g00526 306 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Pumo7g00526 306 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Pumo7g00526 306 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00526 Pumo-Chr7 8336379 8337299 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00526 17 165 Type I MADS-box Gene Family AT5G60440 35.294 1.06e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g00526 SRF-TF 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00526 - - gsj:114418701 307.76