Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00525 ATGGAGGGAACTTCATCGGCATCAGCGACTTTGCCCTCTACTCCTGAAGATCATCTCTTAGTTGACGATTTCTACTTTTCAGCCCTTTACGATGCTGAAGAAGTATTTCCAATTTCAGATGAGAAATATGCAGAAGAGCTACAACTACAAGAAGCCCTTTATTCCTCTACAATGTCAAGTACTACTACTAGAGTTAAAAACGAAGTTATCCAAGTGGATGTAGATGTTGACGGTGACAACCCTTTGAGAACCCTCAAGGGGAAACAGAAAGAGACTGGTGAATCTTCCAGAGTCTACTGTGGCATTTGCATGGATGCCAAATCTGGTGAAGAAATGTTCCGGAACCAAAACTGTTCTCACTCTTTCTGTGATGATTGCATTGGCAGATACGTGGGTGCAAAGATTCAGGAGAATAATATATTAGTGGTGGAGTGTCCTGACCCGAAATGCAAAGTGGTCATAGAGCCTCAATACTGTCGCTCAATTATCCCTAAGGAAGTGTTTGATCGATGGGAAAATGCCCTTTGTGAGAATTTGGTGCTTGGATCACAAAGATTTTATTGCCCTTTTAAGGATTGTTCAGCAATGTTGATATGTGATGCAGGGGAAGTTGTGACTGTTTCCGAATGTCCACATTGTAACAGACTATTTTGTGCGCAGTGCAAGGTTTCATGGCATGCAGGAATAGATTGCAGTGAGTTTCGCAGCTTGAAGCAGGATGAGAGAGGGAGAGAGGATCTAATGGTAATGGAGCTTGCTCAGAACAAAAGTTGGAGAAGATGTCCAAGATGCAAATTCTATGTGGAAAAAATTAGATGGATGTTCACATATTTCTTGCAGATGTGGCAACGAATTTTGTTATGCCTGTGGATCCTCTTGGAGACCGAACCATGGGAAGTTGTGACTGTTTCAGAGTGTCCACATTGTAACAGACTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATAGAGAAATAGATTATGTGGCAATGAATTTTGCTATGCCTGTGGATCCTCTTGGAGTGGTGGTCAGCACTATGAATGTAAACCTCATTAAGAATTGCTGGAAGCAAGTGAAATTGCAAGATCACTTGTGCAATGTTCCGAGACAACTCTCGCTCCTCCGATCCCCTTCTTTTACCTCCTCTGACCAAACAGGAAACCTCCAACGACGTCGAATTGAGGCCCTCTTTATCGAAGGCGAAAACTTGATCCAAGTCTCTGCTTTCACTCTCGCTTTTGGTCTTCACGCTGTGAATCCCAATTACAAGCTTTGA 1275 0.4298 MEGTSSASATLPSTPEDHLLVDDFYFSALYDAEEVFPISDEKYAEELQLQEALYSSTMSSTTTRVKNEVIQVDVDVDGDNPLRTLKGKQKETGESSRVYCGICMDAKSGEEMFRNQNCSHSFCDDCIGRYVGAKIQENNILVVECPDPKCKVVIEPQYCRSIIPKEVFDRWENALCENLVLGSQRFYCPFKDCSAMLICDAGEVVTVSECPHCNRLFCAQCKVSWHAGIDCSEFRSLKQDERGREDLMVMELAQNKSWRRCPRCKFYVEKIRWMFTYFLQMWQRILLCLWILLETEPWEVVTVSECPHCNRLFCAQCKVSWHREIDYVAMNFAMPVDPLGVVVSTMNVNLIKNCWKQVKLQDHLCNVPRQLSLLRSPSFTSSDQTGNLQRRRIEALFIEGENLIQVSAFTLAFGLHAVNPNYKL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00525 424 Pfam IBR domain, a half RING-finger domain 170 231 IPR002867 GO:0008270
Pumo7g00525 424 Pfam IBR domain, a half RING-finger domain 252 325 IPR002867 GO:0008270
Pumo7g00525 424 ProSiteProfiles Zinc finger RING-type profile. 100 149 IPR001841 -
Pumo7g00525 424 CDD BRcat_RBR_unk 182 234 - -
Pumo7g00525 424 FunFam RBR-type E3 ubiquitin transferase 95 182 - -
Pumo7g00525 424 SUPERFAMILY RING/U-box 177 235 - -
Pumo7g00525 424 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 302 327 IPR031127 GO:0004842|GO:0016567
Pumo7g00525 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 182 IPR013083 -
Pumo7g00525 424 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Pumo7g00525 424 SMART ibrneu5 241 324 IPR002867 GO:0008270
Pumo7g00525 424 SMART ibrneu5 169 231 IPR002867 GO:0008270
Pumo7g00525 424 SUPERFAMILY RING/U-box 94 178 - -
Pumo7g00525 424 ProSiteProfiles TRIAD supradomain profile. 96 318 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00525 Pumo-Chr7 8311776 8317816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00525 93 269 C3H Transcription Factor Family AT2G19610 24.868 1.79e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00525 K11975 - gmx:100816161 459.914