Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00524 ATGTCAAGTACTAGAGTTGGAAACGAAGTTATCCAAGTGGATGTAGATGTTGACGGTGACACCCCTTTGAGAATCCTAAAGGGAAAACAGAAAAAGACCAGTGAATCTTCTCAACTCTACTGTGGTATTTGCACGGAAACCAAACTTGATGCCGAAATGTTTATGAACCAAAATTGTTCTCACTCATTCTGTAATGATTGCACTAGAAGACACGTGGCTGCAAAGATTCATGAGAATACGTCAAAGGTGAAGTGCCCTGACCCAAAATGCAAGGTGATTCTGGAGCCTTCAATCATCCCAAAGGACATGTTTGATCGATGGGAAAATGCCCTTTGTGACGCTATGTTGATATGTGATGCTGAGGAAACTGTAATAGGCTTGTTTTGTGCACAGTGCAAGGTTTCATGGCATGCAGGAATGGATTGTAGGGAGTTTCAGAGCTTGAAGCAGCGTGAGAGCTGA 462 0.4286 MSSTRVGNEVIQVDVDVDGDTPLRILKGKQKKTSESSQLYCGICTETKLDAEMFMNQNCSHSFCNDCTRRHVAAKIHENTSKVKCPDPKCKVILEPSIIPKDMFDRWENALCDAMLICDAEETVIGLFCAQCKVSWHAGMDCREFQSLKQRES 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00524 153 ProSiteProfiles TRIAD supradomain profile. 37 153 IPR044066 -
Pumo7g00524 153 SUPERFAMILY RING/U-box 35 114 - -
Pumo7g00524 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 116 IPR013083 -
Pumo7g00524 153 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 149 IPR031127 GO:0004842|GO:0016567
Pumo7g00524 153 FunFam RBR-type E3 ubiquitin transferase 36 118 - -
Pumo7g00524 153 ProSiteProfiles Zinc finger RING-type profile. 41 89 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00524 Pumo-Chr7 8300600 8301107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00524 25 106 ARIADNE family AT1G05890 30.952 1.36e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00524 K11975 - gmx:100815626 209.534