Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00523 ATGAATTTTGCTATGCTTGTGGATCCTCTTGGAGTACCCTTTACGATGCTGAAGAAATATATCCAATCTCAGATGAGAAATATGCAGAAGAGCTACAACTACAAGAAGCCCTATATTCCTCTGCAATGTCAAGTACTATACTTAAAAACGAAGTTATCCAAATTCGATGAAGATGATGACGATGGCACCGCTTTGAGAACTCTCAAGGGTAAACAAAAAGAGACTGGTGATTCTTCTTCCCTAGTCTACTGTGGTATTTGCATGGATGCCAAACCTGGTGAAGAAATGTTCAGGAACCAAAACTGTTCTCACTCTTTTTGCGATGATTGTATTGGAAAATATGTGGCTGCAAAGATTCAGGAGAATATATCAATGGTGAAATGCCCCGACCCAAAATGCAAGGAAGTCATAGAGCCTCAGTACTGTCGTTCAATTATCCCTAAGGAAGTGTTTGATAGATGGAAAAATGCCCTATGTGAGAATTTGGTGCTTGCATCACAAAAATTTTATTGTCCTTTTAAGGATTGCTCAGCTATGTTGATATGTGATGACGTGGAAGTTGTGACTTCTTCCGAATGTCCACATTGTAATAGACTGTTTTGTGCACAGTGCAAGGTTTCATGGCATGCAGGAATAGATTGTAAGGGGTTTCAGAGCTTGAAGGAGGGCGAGCGAGAGAGGGAAGATCTAATGGTAATGGAACTTGCTAAGAAGAAAAGTTGGAGAAGATGTCCAAAGTGCAATTTCTATGTGGAAAAAATTTCCGGGTGTTTACATATTTCTTGCAGATGTGGCAATGAATTTTGCTATGCCTGTGGATCCGAATGGAGTTCTCACCATGCATGTGCATCTCGTTGA 858 0.4033 MNFAMLVDPLGVPFTMLKKYIQSQMRNMQKSYNYKKPYIPLQCQVLYLKTKLSKFDEDDDDGTALRTLKGKQKETGDSSSLVYCGICMDAKPGEEMFRNQNCSHSFCDDCIGKYVAAKIQENISMVKCPDPKCKEVIEPQYCRSIIPKEVFDRWKNALCENLVLASQKFYCPFKDCSAMLICDDVEVVTSSECPHCNRLFCAQCKVSWHAGIDCKGFQSLKEGEREREDLMVMELAKKKSWRRCPKCNFYVEKISGCLHISCRCGNEFCYACGSEWSSHHACASR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00523 285 ProSiteProfiles TRIAD supradomain profile. 80 285 IPR044066 -
Pumo7g00523 285 SMART ibrneu5 152 214 IPR002867 GO:0008270
Pumo7g00523 285 SMART ibrneu5 224 282 IPR002867 GO:0008270
Pumo7g00523 285 Gene3D - 211 285 - -
Pumo7g00523 285 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 280 IPR031127 GO:0004842|GO:0016567
Pumo7g00523 285 CDD Rcat_RBR_unk 241 276 - -
Pumo7g00523 285 SUPERFAMILY RING/U-box 225 282 - -
Pumo7g00523 285 Pfam IBR domain, a half RING-finger domain 153 214 IPR002867 GO:0008270
Pumo7g00523 285 Pfam IBR domain, a half RING-finger domain 235 282 IPR002867 GO:0008270
Pumo7g00523 285 SUPERFAMILY RING/U-box 78 161 - -
Pumo7g00523 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 164 IPR013083 -
Pumo7g00523 285 SUPERFAMILY RING/U-box 159 218 - -
Pumo7g00523 285 FunFam RBR-type E3 ubiquitin transferase 216 285 - -
Pumo7g00523 285 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Pumo7g00523 285 ProSiteProfiles Zinc finger RING-type profile. 84 132 IPR001841 -
Pumo7g00523 285 CDD BRcat_RBR_unk 165 217 - -
Pumo7g00523 285 FunFam RBR-type E3 ubiquitin transferase 79 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00523 Pumo-Chr7 8297947 8300308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00523 84 274 C3H Transcription Factor Family AT2G19610 25.490 8.16e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00523 K11975 - gmx:100815626 417.927