Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo7g00523 | ATGAATTTTGCTATGCTTGTGGATCCTCTTGGAGTACCCTTTACGATGCTGAAGAAATATATCCAATCTCAGATGAGAAATATGCAGAAGAGCTACAACTACAAGAAGCCCTATATTCCTCTGCAATGTCAAGTACTATACTTAAAAACGAAGTTATCCAAATTCGATGAAGATGATGACGATGGCACCGCTTTGAGAACTCTCAAGGGTAAACAAAAAGAGACTGGTGATTCTTCTTCCCTAGTCTACTGTGGTATTTGCATGGATGCCAAACCTGGTGAAGAAATGTTCAGGAACCAAAACTGTTCTCACTCTTTTTGCGATGATTGTATTGGAAAATATGTGGCTGCAAAGATTCAGGAGAATATATCAATGGTGAAATGCCCCGACCCAAAATGCAAGGAAGTCATAGAGCCTCAGTACTGTCGTTCAATTATCCCTAAGGAAGTGTTTGATAGATGGAAAAATGCCCTATGTGAGAATTTGGTGCTTGCATCACAAAAATTTTATTGTCCTTTTAAGGATTGCTCAGCTATGTTGATATGTGATGACGTGGAAGTTGTGACTTCTTCCGAATGTCCACATTGTAATAGACTGTTTTGTGCACAGTGCAAGGTTTCATGGCATGCAGGAATAGATTGTAAGGGGTTTCAGAGCTTGAAGGAGGGCGAGCGAGAGAGGGAAGATCTAATGGTAATGGAACTTGCTAAGAAGAAAAGTTGGAGAAGATGTCCAAAGTGCAATTTCTATGTGGAAAAAATTTCCGGGTGTTTACATATTTCTTGCAGATGTGGCAATGAATTTTGCTATGCCTGTGGATCCGAATGGAGTTCTCACCATGCATGTGCATCTCGTTGA | 858 | 0.4033 | MNFAMLVDPLGVPFTMLKKYIQSQMRNMQKSYNYKKPYIPLQCQVLYLKTKLSKFDEDDDDGTALRTLKGKQKETGDSSSLVYCGICMDAKPGEEMFRNQNCSHSFCDDCIGKYVAAKIQENISMVKCPDPKCKEVIEPQYCRSIIPKEVFDRWKNALCENLVLASQKFYCPFKDCSAMLICDDVEVVTSSECPHCNRLFCAQCKVSWHAGIDCKGFQSLKEGEREREDLMVMELAKKKSWRRCPKCNFYVEKISGCLHISCRCGNEFCYACGSEWSSHHACASR | 285 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo7g00523 | 285 | ProSiteProfiles | TRIAD supradomain profile. | 80 | 285 | IPR044066 | - | |
Pumo7g00523 | 285 | SMART | ibrneu5 | 152 | 214 | IPR002867 | GO:0008270 | |
Pumo7g00523 | 285 | SMART | ibrneu5 | 224 | 282 | IPR002867 | GO:0008270 | |
Pumo7g00523 | 285 | Gene3D | - | 211 | 285 | - | - | |
Pumo7g00523 | 285 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 37 | 280 | IPR031127 | GO:0004842|GO:0016567 | |
Pumo7g00523 | 285 | CDD | Rcat_RBR_unk | 241 | 276 | - | - | |
Pumo7g00523 | 285 | SUPERFAMILY | RING/U-box | 225 | 282 | - | - | |
Pumo7g00523 | 285 | Pfam | IBR domain, a half RING-finger domain | 153 | 214 | IPR002867 | GO:0008270 | |
Pumo7g00523 | 285 | Pfam | IBR domain, a half RING-finger domain | 235 | 282 | IPR002867 | GO:0008270 | |
Pumo7g00523 | 285 | SUPERFAMILY | RING/U-box | 78 | 161 | - | - | |
Pumo7g00523 | 285 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 164 | IPR013083 | - | |
Pumo7g00523 | 285 | SUPERFAMILY | RING/U-box | 159 | 218 | - | - | |
Pumo7g00523 | 285 | FunFam | RBR-type E3 ubiquitin transferase | 216 | 285 | - | - | |
Pumo7g00523 | 285 | ProSitePatterns | Zinc finger RING-type signature. | 102 | 111 | IPR017907 | - | |
Pumo7g00523 | 285 | ProSiteProfiles | Zinc finger RING-type profile. | 84 | 132 | IPR001841 | - | |
Pumo7g00523 | 285 | CDD | BRcat_RBR_unk | 165 | 217 | - | - | |
Pumo7g00523 | 285 | FunFam | RBR-type E3 ubiquitin transferase | 79 | 165 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo7g00523 | Pumo-Chr7 | 8297947 | 8300308 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo7g00523 | 84 | 274 | C3H Transcription Factor Family | AT2G19610 | 25.490 | 8.16e-18 | 80.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo7g00523 | K11975 | - | gmx:100815626 | 417.927 |