Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00515 ATGATGTTGGCCGCCGACGTCCACCTCGGCACTAAAAACTGCGACTTCCAGATGGAACGTTACATCTTCAAGCGCCGCAACGACGGGATTTACATTATTAACCTTGGGAAGACATGGGAAAAGCTTCAGCTTGCTGCTAGGGTTATTGTTGCAATTGAGAACCCTCAGGATATCATTGTTCAATCCGCGAGGCCTTATGGGCAGAGAGCGGTTCTCAAGTTTGCTCAGTACACTGGTGCTCATGCTATTGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAAACTTCCTTCAGTGAGCCTCGTCTCCTTATCCTCACTGATCCAAGAACAGATCACCAGCCTATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCTTTCTGTGACACTGATTCGCCTATGAGGTATGTGGACATTGGAATTCCTGCCAACAACAAGGGCAAGCACAGCATTGGTTGTCTCTTCTGGCTCCTTGCAAGGATGGTGTTACAGATGAGGGGTACCATTCGCCCAGGCCTCAAATGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCGGCAGGTGATTATGCCATCACAGATTTCAATGCAGGTGCTATTGCTGCTGATGGCCAGTGGCCTGGTACAATTGATCAATCATGGAGCGATGCAGTTCCACAACCTATTCCAGCAGTACCTGGTGTCAACTGGGGGGCACCTGCAGAAGCACCTGCTGTTGCAGGAGGAGATTGGGGTGAAGCTGTACCACCACCACAACAAATCCCTGTTCCTCCTTCTGGAATTGAATCTGTCCAACCTACTGGCTGGGAATAA 864 0.4977 MMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDFNAGAIAADGQWPGTIDQSWSDAVPQPIPAVPGVNWGAPAEAPAVAGGDWGEAVPPPQQIPVPPSGIESVQPTGWE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00515 287 Hamap 40S ribosomal protein SA [rps-0]. 1 234 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pumo7g00515 287 ProSitePatterns Ribosomal protein S2 signature 2. 103 127 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 CDD RPS2 2 168 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 NCBIfam 30S ribosomal protein S2 1 190 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pumo7g00515 287 PANTHER 40S RIBOSOMAL PROTEIN SA 1 271 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pumo7g00515 287 MobiDBLite consensus disorder prediction 223 287 - -
Pumo7g00515 287 Pfam Ribosomal protein S2 101 166 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 Pfam Ribosomal protein S2 2 96 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 SUPERFAMILY Ribosomal protein S2 2 184 IPR023591 -
Pumo7g00515 287 Gene3D - 1 204 - -
Pumo7g00515 287 PRINTS Ribosomal protein S2 signature 103 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 PRINTS Ribosomal protein S2 signature 141 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 PRINTS Ribosomal protein S2 signature 78 95 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 PRINTS Ribosomal protein S2 signature 120 131 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 PRINTS Ribosomal protein S2 signature 29 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pumo7g00515 287 FunFam 40S ribosomal protein SA 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00515 Pumo-Chr7 8103730 8106142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00515 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.316 5.69e-144 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00515 7 8103730 8106142 Pumo7g00515 7 8103730 8106142 ECH