LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g00502	ATGGCTGATTCTTTTTCCTTTGAGGGTGACTCCATCTCAAGCCACCAGAGAAGACACTATCCAACACCAGTGAGTTATCAAAGTGTGTCTGGCTCTGGCTCTTTCATACCATCCAGCTCTCTAAGCAATGCCACTCCCACAACCCGAAGAGCTCGCCGCAACCGAGTTCCTGCCACACCCTTTGCTTCAGATGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTCTCAGGCCACCGGGTGGCGCGATTACAGCACAAACTTTGGTTCTGTTCTGAGTCCATGGCCAGATAGCTCCCCTTCTGGTCACAGCCGGATATTTCGTCGATCAGCCAATGATTACTACCTTTCAAGAACAGGTAGGTTCAGAGGTCTTGCAAGCTCTTCTCATGAACAATCTCGCTATGGCAGAGTTGAACTTCAGAGCTATGTTGCTAGGGACAATGATTATAGTTACTTTGACCAGCATAGGCAGCCTCATGGATTGTCAAAATTGGGGATTGTCCAAGAGAAGAGTAGTAGAAAAGGTAAGAGTAGTCCATTGGCTGAGGAAGATGAGCTTAGCATGATAGATTATAGCATAGCAGATGATCCTGTTATTTCACCTAATAGGAATGGTCATGGTCTTGAATCCCCATATTTTAGACATGGTCATGGTGATTATGGTGGGAATGGGAATTATCATGTTGGTCATGATGGACTACCATCACATGGTAGCCAAATTTATGGAAGTGGTGGTGGTTATTCTTATAGTCACCGTGACATCGAGAAGATTTCAGCATATGATGAAGAAGGTGAGGAGGACATGGATGAGGAAGATGCAAGGCCTCCAAAGACAGTTGGGCTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGGTGCTTGTGTTTGTGGGGTGTTTAGGGGCTCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAGACGTGGTCAATAAGATCTCAGAAGCTGAGAGTGACAAAGCACAAATGATGAAGGATGTAGAGAGGGTACTAATTCTTTCTTTCTCACTCTCTTCTTTTCTTGGTCAAATGTTTGCATACAGAGTGGAGTTGAAACATATTTTCATTGTCTTCTTGTCATTTTCAGATATGCATATTTATGGCCGGGCTAGCTGCTGTTGTGAGATCACATGTTGGAGGTTAGTGGGGGAGCGTGCTGCTCAAAGAATTAGAACTGAGTATCTAAGAGCGGTTCTTCGACAGGACATTACTTTTTTTGATACAGATATCAACACTGGTGATATTATGCATGGAATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTTATTCATCATATATTTACATTCATATGTGGGTACGCAGTTGGGTTTAAAAGATCATGGAAAGTCTCTCTTGTGGTATTCTCTGTCACTCCATTGACAATGTTCTGTGGAATGGCTTACAAAGCACTTTATGGTGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCATTGCGGAGCAGGCCATCAGTTCAATTAGGACAGTGTTTTCATTTGTTGCAGAAAGCCAATTGTCAGGAAAATATGCCGAACTACTGCAAAAATCATCTCCAATAGGGGCCAGAGTTGGTTTTGCTAAAGGTATAGGCATGGGAGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCTTTCTGGTATGGCTCTATATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTATATTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGTCCTGATTCTCTTATACTTCATTCACTTAACTTGGTGATACCATCTTCAAAAACTGTTGCATTGGTTGGTGTCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGACCCTATTGAAGGTAAAAAGAACTATATGATGATTTCTGAAAGATCTTGTGAAAGGCTGAAAGCTAATGGAAATGGCTTACGTGACCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATTCTGGAAAACGTGATGATGGGGAAAGATAATGCCACAAAGAAAGAGGCAATTACTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTAGGGGACAGGGGTACAAAACTCTCGGGAGGTCAAAAGCAGAGAATTGCATTGGCTCGAGCAATGATCAAAGATCCTAAAATTCCTTCTCCTAGATGA	2454	0.4303	MADSFSFEGDSISSHQRRHYPTPVSYQSVSGSGSFIPSSSLSNATPTTRRARRNRVPATPFASDDDHSWQEEVSWKSQATGWRDYSTNFGSVLSPWPDSSPSGHSRIFRRSANDYYLSRTGRFRGLASSSHEQSRYGRVELQSYVARDNDYSYFDQHRQPHGLSKLGIVQEKSSRKGKSSPLAEEDELSMIDYSIADDPVISPNRNGHGLESPYFRHGHGDYGGNGNYHVGHDGLPSHGSQIYGSGGGYSYSHRDIEKISAYDEEGEEDMDEEDARPPKTVGLFSLFRYSTKWDWVLVFVGCLGALINGGSLPWYSYLFGDVVNKISEAESDKAQMMKDVERVLILSFSLSSFLGQMFAYRVELKHIFIVFLSFSDMHIYGRASCCCEITCWRLVGERAAQRIRTEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLSGKYAELLQKSSPIGARVGFAKGIGMGVIYLITYSTWALAFWYGSILIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYIIERIPEIDPYSPEGRKLSGVRGRIELKNVSFAYPSRPDSLILHSLNLVIPSSKTVALVGVSGGGKSTIFALIERFYDPIEGKKNYMMISERSCERLKANGNGLRDQIGMVGQEPILFATSILENVMMGKDNATKKEAITACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMIKDPKIPSPR	817

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g00502	817	Pfam	ABC transporter	667	813	IPR003439	GO:0005524
	Pumo7g00502	817	MobiDBLite	consensus disorder prediction	1	65	-	-
	Pumo7g00502	817	SUPERFAMILY	ABC transporter transmembrane region	279	634	IPR036640	GO:0005524\|GO:0016020
	Pumo7g00502	817	CDD	ABC_6TM_Pgp_ABCB1_D1_like	299	622	-	-
	Pumo7g00502	817	Pfam	ABC transporter transmembrane region	298	596	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pumo7g00502	817	Gene3D	-	639	813	IPR027417	-
	Pumo7g00502	817	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	299	614	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pumo7g00502	817	MobiDBLite	consensus disorder prediction	7	52	-	-
	Pumo7g00502	817	Gene3D	ABC transporter type 1, transmembrane domain	285	638	IPR036640	GO:0005524\|GO:0016020
	Pumo7g00502	817	PANTHER	ABC TRANSPORTER B FAMILY	260	813	IPR039421	-
	Pumo7g00502	817	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	641	813	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g00502	Pumo-Chr7	8001188	8006556	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g00502	270	813	Calmodulin-binding Proteins	AT2G36910	40.257	2.74e-123	399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g00502	K05658		-	gmx:100816700	1287.32