Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00501 ATGTTTGGGGTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTAGAACATGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTGGCACCAGATACTTCTATGGCGGCTACAGCAATTCCTGCAGTTCAAGATATCATAAAACGTAGGCCACTGATTGACAATGATAGAACAGAAGGTAGGATAGTACACAGATCAAAGCCGTTCAACATAGAATTCAAGATGGTGACATTTGCATACCCATCTAGGCCAGAGGTGACTGTGTTGAGGGATTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGGAAGTCAACAGTCGTATGGTTGACTCAGAGGTTCTATGATCCTGATCAAGGAAAGGTGATGATGAGTGGGATAGATTTGAGGGAGATTGATGTGAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGAAAATATTGCATTTGGGGACCCAAATGCTTCATGGACTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAAGGTTATGAAACCCAGGTTGGTGAAAGTGGGGTCCAATTATCAGGTGGCCAGAAACAAAGAATTGCGATAGCAAGGGCCATATTGAAGAAATCAAGGGTGCTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATTCAAGAAGCCCTTAAGAATGTTGCCAAAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATCAGAGAAGCTGACAAGATCGCAGTTATGAGAGATGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAAGTCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 1029 0.449 MFGVFQGSMYGAYTLTLWFGAYLVEHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVQDIIKRRPLIDNDRTEGRIVHRSKPFNIEFKMVTFAYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVVWLTQRFYDPDQGKVMMSGIDLREIDVKWLRRQMALVGQEPALFAGSIRENIAFGDPNASWTEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQEALKNVAKEATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASSQNGLYASLVRAETEANAFS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00501 342 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 60 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g00501 342 CDD ABC_MTABC3_MDL1_MDL2 96 334 - -
Pumo7g00501 342 FunFam ABC transporter B family member 1 87 336 - -
Pumo7g00501 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 333 IPR027417 -
Pumo7g00501 342 SMART AAA_5 123 309 IPR003593 GO:0016887
Pumo7g00501 342 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 332 IPR003439 GO:0005524
Pumo7g00501 342 PANTHER ABC TRANSPORTER B FAMILY 5 334 IPR039421 -
Pumo7g00501 342 Pfam ABC transporter 115 262 IPR003439 GO:0005524
Pumo7g00501 342 Gene3D - 94 336 IPR027417 -
Pumo7g00501 342 Gene3D ABC transporter type 1, transmembrane domain 1 92 IPR036640 GO:0005524|GO:0016020
Pumo7g00501 342 SUPERFAMILY ABC transporter transmembrane region 2 79 IPR036640 GO:0005524|GO:0016020
Pumo7g00501 342 ProSitePatterns ABC transporters family signature. 235 249 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00501 Pumo-Chr7 7998657 8000032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00501 9 339 Calmodulin-binding Proteins AT2G36910 49.849 6.42e-101 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00501 K05658 - gmx:100816700 636.721