Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00493 ATGGCGACCAAAAATTCACCTATGGAGCTGCACGAAATCACCACCGAATCCGAAGGATCCGACCTAGATTCCGACTGGGACGATTCGGAGGAAGACCCCGATTACGACGACGCGCTCGAAGAAACTCATAGCAAGTTCTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGTGCGTTGTCGAAGATAAGGGTCTAGGTGGGGAAGTGTTGGAGGTGAATGCATCTGTTCATGATGGAGAGAACTCTGAGAAAGTTCAAAACTTGATCCAAGCGGGACTGTTAGAGAAACTGAAAGTGGATGAATGCAAGTTGTATCTGAGGAACAATGGTCTGAGGCTAACTGGAAACAAGGGCACACTTATACAACGCATAAAGGAGCATTTAGAGATTTTAAATGGAGGGGAGAAGAAGTATCCGCCTTCAAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATTTTCCTTATCAGAATTGGTTTTCTCAGGTTCAACATAGCATCTAGGAGTGCAAGTGGTCCACCTTGTGGCAAAAGGATTGTCGCAGGCCGCATAGTGAAAGAAAGTTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTACTGTGGAGCAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTATAGGTTAAAGACTTTGAGACAGAAATGGGAGGATGAAGCAAAAAGGCAGAAAATATTGATGGAAAAACACTTAAGGGGATCTCTTGCTAGGGCAGATAGAGGAGCAAGGATACAAGAAAAGGAGAAGAGGAAAAAAAATAGGGAAAATAGGGTCTCCAAAAAGGATTCATCAAGGAACCAATGTCAACCACGTTCAGACATTACAAGGTCACAATATCAACCTCAAGAAACAGGTGTACCCATTAATCCAGAGAAGCCAGAATTTCCATCTCGAAATTCAGGTTTATCTGCCAACATAAGGAAAGAAACATCATCTATTGTAAATAAGCCAGCAGCTGTAACTGGACAGCGTGTTGATTCTAAAACTATGGCTATGGCAACTTTAGGAAGAACATCATTTACTGTTCACAACATGCATAATCAGCAAGCTTGGAACCGCACAGGTGACTGTAGGAGTACTTTTGATATTGGTCATATGAAGGGAGCTGAACTTAGGGCAAACTACAATTATAGTGACCCCCATTTCAGAGAAAAACCAACTATTATTCTGAAATACCACCACCCTTTCATGGCTGAGACAAGTGGATTTACAGTGGGGACTCATCATAGGATGCCTTTGGCAAATGCAAACCACTCTCACCAAATGATGCCCAACAGAGAAAGCTATAAGCACAACCAGGTGTGTAGACATTATGCCCGTGGGAGGTGCTATTTTGGGGACAACTGCAAATTCTTACATGATTTGAGAGACAAAGGGAATGCCTGA 1479 0.4287 MATKNSPMELHEITTESEGSDLDSDWDDSEEDPDYDDALEETHSKFSNLSLKHKAKACVVEDKGLGGEVLEVNASVHDGENSEKVQNLIQAGLLEKLKVDECKLYLRNNGLRLTGNKGTLIQRIKEHLEILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEIFLIRIGFLRFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRQKILMEKHLRGSLARADRGARIQEKEKRKKNRENRVSKKDSSRNQCQPRSDITRSQYQPQETGVPINPEKPEFPSRNSGLSANIRKETSSIVNKPAAVTGQRVDSKTMAMATLGRTSFTVHNMHNQQAWNRTGDCRSTFDIGHMKGAELRANYNYSDPHFREKPTIILKYHHPFMAETSGFTVGTHHRMPLANANHSHQMMPNRESYKHNQVCRHYARGRCYFGDNCKFLHDLRDKGNA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00493 492 MobiDBLite consensus disorder prediction 1 37 - -
Pumo7g00493 492 FunFam Zinc finger CCCH domain-containing protein 62 450 491 - -
Pumo7g00493 492 SMART sap_9 94 128 IPR003034 -
Pumo7g00493 492 MobiDBLite consensus disorder prediction 267 333 - -
Pumo7g00493 492 Gene3D SAP domain 74 140 IPR036361 -
Pumo7g00493 492 ProSiteProfiles SAP motif profile. 94 128 IPR003034 -
Pumo7g00493 492 Pfam SAP domain 94 128 IPR003034 -
Pumo7g00493 492 ProSiteProfiles Zinc finger C3H1-type profile. 460 487 IPR000571 GO:0046872
Pumo7g00493 492 Gene3D - 448 491 - -
Pumo7g00493 492 SUPERFAMILY CCCH zinc finger 461 485 IPR036855 GO:0046872
Pumo7g00493 492 SUPERFAMILY SAP domain 83 129 IPR036361 -
Pumo7g00493 492 PANTHER SAP DOMAIN-CONTAINING PROTEIN 15 487 - -
Pumo7g00493 492 Pfam CCCH-type zinc finger 465 485 IPR041367 -
Pumo7g00493 492 MobiDBLite consensus disorder prediction 267 298 - -
Pumo7g00493 492 MobiDBLite consensus disorder prediction 299 316 - -
Pumo7g00493 492 MobiDBLite consensus disorder prediction 19 37 - -
Pumo7g00493 492 SMART c3hfinal6 461 486 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00493 Pumo-Chr7 7869660 7873938 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo7g00493 SAP 6.5e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00493 - - gmx:100815642 736.487