Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00487 ATGGGCCAACATGACATCTTCAGGCCCATATTAGCTTTCATTTGGGCCACCACGGCCTGTGCTCTGAGAGGGGCCATAGTTTGGGACCCTTTGAACCCTAATCTCCACCCAAACCCATTTTCCCGGAAAATTCCCTCGGAAGAGAAAAAAGCGAAGAGCAAAATGCAGAATCACAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGTTGTAAGCTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCATTTCAACATATTTGTTGGTGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGCGCTATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACGAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAGCTAACAAATGGCTCATCTGAAGATGGTAAAGAGTCATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATTCTCTTGGGACTGGAGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAACCCCCTTCCCCCACCTGCTGCTGCATCCCTGCCTGGCCTGTCTGCAACTGATCTTTTGGCGTATGAGCGACAGCTAGCAATAAGCAAGATGGGCGGCGTCCATGCCTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAGGCAGCTATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAAAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1428 0.472 MGQHDIFRPILAFIWATTACALRGAIVWDPLNPNLHPNPFSRKIPSEEKKAKSKMQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDGKESSNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGTGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAISKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00487 475 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 395 - -
Pumo7g00487 475 Gene3D - 43 193 IPR012677 -
Pumo7g00487 475 FunFam oligouridylate-binding protein 1-like isoform X2 194 289 - -
Pumo7g00487 475 SUPERFAMILY RNA-binding domain, RBD 303 396 IPR035979 GO:0003676
Pumo7g00487 475 Coils Coil 60 80 - -
Pumo7g00487 475 Gene3D - 194 296 IPR012677 -
Pumo7g00487 475 SUPERFAMILY RNA-binding domain, RBD 95 189 IPR035979 GO:0003676
Pumo7g00487 475 MobiDBLite consensus disorder prediction 274 316 - -
Pumo7g00487 475 MobiDBLite consensus disorder prediction 277 316 - -
Pumo7g00487 475 CDD RRM2_PUB1 195 274 - -
Pumo7g00487 475 SMART rrm1_1 318 388 IPR000504 GO:0003723
Pumo7g00487 475 SMART rrm1_1 197 270 IPR000504 GO:0003723
Pumo7g00487 475 SMART rrm1_1 112 181 IPR000504 GO:0003723
Pumo7g00487 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 392 IPR000504 GO:0003723
Pumo7g00487 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 185 IPR000504 GO:0003723
Pumo7g00487 475 MobiDBLite consensus disorder prediction 38 66 - -
Pumo7g00487 475 Gene3D - 297 396 IPR012677 -
Pumo7g00487 475 FunFam Oligouridylate-binding protein 1C 294 396 - -
Pumo7g00487 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Pumo7g00487 475 FunFam oligouridylate-binding protein 1B-like isoform X2 55 193 - -
Pumo7g00487 475 SUPERFAMILY RNA-binding domain, RBD 190 281 IPR035979 GO:0003676
Pumo7g00487 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 378 IPR000504 GO:0003723
Pumo7g00487 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 179 IPR000504 GO:0003723
Pumo7g00487 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 268 IPR000504 GO:0003723
Pumo7g00487 475 CDD RRM1_PUB1 113 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00487 Pumo-Chr7 7814368 7821181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00487 194 385 Eukaryotic Initiation Factors Gene Family AT1G49760 27.692 1.02e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00487 K13201 - gmx:100781227 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00487 7 7814368 7821181 Pumo7g00487 7 7814368 7821181 ECH