Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo7g00487 | ATGGGCCAACATGACATCTTCAGGCCCATATTAGCTTTCATTTGGGCCACCACGGCCTGTGCTCTGAGAGGGGCCATAGTTTGGGACCCTTTGAACCCTAATCTCCACCCAAACCCATTTTCCCGGAAAATTCCCTCGGAAGAGAAAAAAGCGAAGAGCAAAATGCAGAATCACAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAAGCTCTGATGCAGCAAGCTCTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTCGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGTTGTAAGCTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCATTTCAACATATTTGTTGGTGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGCGCTATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACGAAAGGTGCTGGTGGTAATGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAGCTAACAAATGGCTCATCTGAAGATGGTAAAGAGTCATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTTGATCTCCATCGCCACTTCCATTCTCTTGGGACTGGAGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTCTGTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAACCCCCTTCCCCCACCTGCTGCTGCATCCCTGCCTGGCCTGTCTGCAACTGATCTTTTGGCGTATGAGCGACAGCTAGCAATAAGCAAGATGGGCGGCGTCCATGCCTTGATGCATCCCCAAGGGCAACATCCTCTTAAACAGGCAGCTATTGGAGCCAGCCAGGCAATATATGATGGTGGGTTCCAAAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA | 1428 | 0.472 | MGQHDIFRPILAFIWATTACALRGAIVWDPLNPNLHPNPFSRKIPSEEKKAKSKMQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDGKESSNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGTGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSATDLLAYERQLAISKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ | 475 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo7g00487 | 475 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 85 | 395 | - | - | |
Pumo7g00487 | 475 | Gene3D | - | 43 | 193 | IPR012677 | - | |
Pumo7g00487 | 475 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 194 | 289 | - | - | |
Pumo7g00487 | 475 | SUPERFAMILY | RNA-binding domain, RBD | 303 | 396 | IPR035979 | GO:0003676 | |
Pumo7g00487 | 475 | Coils | Coil | 60 | 80 | - | - | |
Pumo7g00487 | 475 | Gene3D | - | 194 | 296 | IPR012677 | - | |
Pumo7g00487 | 475 | SUPERFAMILY | RNA-binding domain, RBD | 95 | 189 | IPR035979 | GO:0003676 | |
Pumo7g00487 | 475 | MobiDBLite | consensus disorder prediction | 274 | 316 | - | - | |
Pumo7g00487 | 475 | MobiDBLite | consensus disorder prediction | 277 | 316 | - | - | |
Pumo7g00487 | 475 | CDD | RRM2_PUB1 | 195 | 274 | - | - | |
Pumo7g00487 | 475 | SMART | rrm1_1 | 318 | 388 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | SMART | rrm1_1 | 197 | 270 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | SMART | rrm1_1 | 112 | 181 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 392 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 185 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | MobiDBLite | consensus disorder prediction | 38 | 66 | - | - | |
Pumo7g00487 | 475 | Gene3D | - | 297 | 396 | IPR012677 | - | |
Pumo7g00487 | 475 | FunFam | Oligouridylate-binding protein 1C | 294 | 396 | - | - | |
Pumo7g00487 | 475 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 274 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | FunFam | oligouridylate-binding protein 1B-like isoform X2 | 55 | 193 | - | - | |
Pumo7g00487 | 475 | SUPERFAMILY | RNA-binding domain, RBD | 190 | 281 | IPR035979 | GO:0003676 | |
Pumo7g00487 | 475 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 319 | 378 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 179 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 268 | IPR000504 | GO:0003723 | |
Pumo7g00487 | 475 | CDD | RRM1_PUB1 | 113 | 183 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo7g00487 | Pumo-Chr7 | 7814368 | 7821181 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo7g00487 | 194 | 385 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 27.692 | 1.02e-13 | 71.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo7g00487 | K13201 | - | gmx:100781227 | 793.112 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo7g00487 | 7 | 7814368 | 7821181 | Pumo7g00487 | 7 | 7814368 | 7821181 | ECH |