Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00452 ATGATGAGTGCAAGTGCAAGAAATAGGTCTCCTTTCACACCAACTCAGTGGCAAGAACTTGAGCAACAAGCTCTTGTTTTTAAGTACATGGTTACAGGAACACCTATCCCACCAGATCTCATATACTCTATTAAAAGAAGCCTAGACACTTCAATTTCTTCAAGGCTCTTCCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACAACAAGCACCGCCACAAACACCTCCCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGACCAACAACCCCAACAACATAACCTCACCCTCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCATGTGAGTCCCAACCTTTTTCCCAATCCTACCAAAACTCTTCTCTCAATCCCTTCTTCTACTCCCAATCAATCTCCTCTAGACCCCCAGATTCTGATTTTCCACCTCAAGATGCCACCACCCACCAGCTATTCATGGACTCTGGCTCTTATTCTCATGATCAAAAGGATTATAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCATCAGGATCAGCTAGGAGCTACACTGACTCATATCAACAACTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAACTTTCAGAACATCAATGATAGCACCAACCCAAGACAGCAAGAGCAGCAACAGCACTGCTTTGTTTTGGGGACAGACTTCAAATCAACAAGACCAAACAAAGAGAAAGAAGCTGAGACAACAAGTCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGATGAATGA 1029 0.447 MMSASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSTTSTATNTSQTIPSYTRNLSLTNNPNNITSPSSFPFSPLPSSMPCESQPFSQSYQNSSLNPFFYSQSISSRPPDSDFPPQDATTHQLFMDSGSYSHDQKDYRHVHGIREDVDERAFFPEASGSARSYTDSYQQLSMSSYKSYSNSNFQNINDSTNPRQQEQQQHCFVLGTDFKSTRPNKEKEAETTSQRPLHRFFGEWPPKNTTDSWLDLASNSRIPTDE 342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00452 342 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo7g00452 342 PANTHER GROWTH-REGULATING FACTOR 5 10 213 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo7g00452 342 MobiDBLite consensus disorder prediction 107 175 - -
Pumo7g00452 342 MobiDBLite consensus disorder prediction 327 342 - -
Pumo7g00452 342 MobiDBLite consensus disorder prediction 296 310 - -
Pumo7g00452 342 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo7g00452 342 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo7g00452 342 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Pumo7g00452 342 Pfam WRC 77 119 IPR014977 -
Pumo7g00452 342 MobiDBLite consensus disorder prediction 117 175 - -
Pumo7g00452 342 MobiDBLite consensus disorder prediction 291 342 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo7g00452 Pumo-Chr7 7202588 7204360 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00452 1 340 GRF Transcription Factor Family AT3G13960 41.604 8.76e-71 224
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo7g00452 WRC 1.8e-21 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00452 - - gmx:100806024 608.601
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00452 7 7202588 7204360 Pumo7g00452 7 7202588 7204360 ECH