Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00450 ATGAGTAACTGGTTGGGATTCTCTCTGACTCCTCACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGGAGGAGGAGGAGGGTATCATCATCCTCCTTCTCCTCACCCTCAATTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTTTGTGTTGCTGACTCCTTTAGCCACTCTGCTGCATCTCAAGAATGGAGATATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAGAAGGTCCAAAGCTTGAGGACTTTTTGGGTTGCTACTCAAACTCCCCCACTAAGGTCTTTTGCCAAGACTCTCAGCATGACCAAAACCAAAGCCAGAACAACGTTTCGAAAATCAATGTTAATGTGGCACCAAGCTTTTGCACCAATGCAGAGATTGAAACTGGGGAGAGCCTCACAAACCCATCTTCCTTGCTCCAATCTTTCCATGCATATAATGATAACTCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCACAAACTCAGTTTTCTGATGGAAAACCTTCAACTGAGTCTAATGGGTGTAATTTCCAATCTCTGTCCCTCACTATGAGCCCCAGTGTGCAAAATGGGGTGGGTGCAATTTCCTCTGTTCAAGTGAGTGAAGACAATAGGAAACGGGCCATGGCAAAATCTCATGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGCTCCACCCTCATTGCAGGAGATCTTGCAAAACGGTCCCCTAAAGAATCATCAGCTCTGGTTCCTGCCGAGGACTTCAATTCGTGTGGTTCATTGATGCCGGCGTCTCAGCCACCTCCTATGGCTATAACTGATGGTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAGTGATGAGCAAGCACAGAATGAGAGTGCTAACAACATCAACAGCAATGTCGCTGAATCATCGTCACAACAGGTTTCACCAAGCAACAACAAGGATGCTCTGAACCCTCAAAACCCCAAGTGTTCTGTGGGGCTTCCCAATGAGTTTGGAGTCAGTGGAGCAGATTATGGACATGGGTACTTCACTTTGGATGGACCAAAATATGATGATGGGAACAATGAAAATGACCACATGAGCACCAACAGGCTCGGAAATTTGGGACTGGTTAATCAAGTTCCCATGTTTGCTTTGTGGAATGAATGA 1731 0.4518 MSNWLGFSLTPHLRIDEEFGRENQERGGGGGGYHHPPSPHPQLSVMPLRSDGSLCVADSFSHSAASQEWRYDSAIGGGNSNEEGPKLEDFLGCYSNSPTKVFCQDSQHDQNQSQNNVSKINVNVAPSFCTNAEIETGESLTNPSSLLQSFHAYNDNSHALIPTNGMYKSWLAQTQFSDGKPSTESNGCNFQSLSLTMSPSVQNGVGAISSVQVSEDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESSALVPAEDFNSCGSLMPASQPPPMAITDGEHSDELSNMMWNANSDEQAQNESANNINSNVAESSSQQVSPSNNKDALNPQNPKCSVGLPNEFGVSGADYGHGYFTLDGPKYDDGNNENDHMSTNRLGNLGLVNQVPMFALWNE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00450 576 SMART rav1_2 245 317 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 SMART rav1_2 347 411 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 MobiDBLite consensus disorder prediction 492 518 - -
Pumo7g00450 576 Pfam AP2 domain 245 303 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 Pfam AP2 domain 346 397 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 PRINTS Ethylene responsive element binding protein signature 387 407 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 FunFam AP2-like ethylene-responsive transcription factor ANT 244 313 - -
Pumo7g00450 576 ProSiteProfiles AP2/ERF domain profile. 245 311 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700|GO:0006355
Pumo7g00450 576 Gene3D AP2/ERF domain 244 313 IPR036955 GO:0003700|GO:0006355
Pumo7g00450 576 SUPERFAMILY DNA-binding domain 346 407 IPR016177 GO:0003677
Pumo7g00450 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 485 - -
Pumo7g00450 576 CDD AP2 244 313 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 CDD AP2 346 407 IPR001471 GO:0003700|GO:0006355
Pumo7g00450 576 MobiDBLite consensus disorder prediction 22 42 - -
Pumo7g00450 576 FunFam AP2-like ethylene-responsive transcription factor 346 407 - -
Pumo7g00450 576 SUPERFAMILY DNA-binding domain 244 313 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00450 Pumo-Chr7 7171794 7175606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00450 1 435 AP2-EREBP Transcription Factor Family AT1G72570 51.078 3.80e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo7g00450 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00450 K09285 - gmx:100805489 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00450 7 7171794 7175606 Pumo7g00450 7 7171794 7175606 ECH