Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00422 ATGAAGAACTTATGTGAGAAAGGCTCTGGTTCTACCCATTTAACATCTTATGCTCTTGGATGCTCATCATGGGGGACTTCCTCTGAATCTGATGTGCAACAATCATCCATGTCCAAAAGTTTGAGCTTGAAAATGAGTGTTCTGCCGCAACAATCATCCAAGCCATTGAGTTTTCAATATCAAGACCGAGATTCATCTTCAACTCAATCAACTGGTCAGTCTTACCCGGAAGCTGGTTCAGCACAATCAGGTCAAATTTCAGTCCAGTGTAGCGATTCTTCTGCTTGTTCAACACTTAACACAACTGGGGGAAAGAGTTTGGAAGGTGTCATCAGGTCATCTTTGGGGAGCCAGGATTTTACCTTCCATCCTTCTCAACTGTATTACAACCAATCACTTGCTCATACTGCATTCCACCTTGCTGAGCCATGCTTTAGTGGCCTACTACCTGCTCCATATGGGCCACAGCCTAATATTCATCATGCTCAGCTAATAGGAATGACTCCTGCTCGAATTCCTCTGCCGCTTGATCTTAGTGAAGAGCCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGACGCAGACAGTATCGTGCAAAACTGGAAGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCATGAGTCCCGCCATCTACATGCACTGAAGAGAGCTAGAGGTTCCGGTGGACGCTTTTTGAATTCCAAAAAGCTCCAAGAGTCAAAGCTCACTTCGGCAAACAATGGCCTACATGTTTCCGGCTGTACTCAGTTGAATCTGAGGGGAAATATGTCAGAATCTAAGGTTCATCCAGTAGAAAGCTTAAACTACAAAGATGGTGCTTCCACAACCACCTGTTCTGATGTTACTAGTGCATCTAATAGTGATGGTGTCTTCCAGCAACATGAGCCAGACTTTAGGTTATGTGGTTACCCTTCTCTTATTGGAAGGAACATGCAGGCTTACTCCGCCGATATCGGCGGCGGTGGTAGAAATGAACATCGTCTATCAGTCCTTATGTGA 1035 0.4444 MKNLCEKGSGSTHLTSYALGCSSWGTSSESDVQQSSMSKSLSLKMSVLPQQSSKPLSFQYQDRDSSSTQSTGQSYPEAGSAQSGQISVQCSDSSACSTLNTTGGKSLEGVIRSSLGSQDFTFHPSQLYYNQSLAHTAFHLAEPCFSGLLPAPYGPQPNIHHAQLIGMTPARIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNSKKLQESKLTSANNGLHVSGCTQLNLRGNMSESKVHPVESLNYKDGASTTTCSDVTSASNSDGVFQQHEPDFRLCGYPSLIGRNMQAYSADIGGGGRNEHRLSVLM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00422 344 Gene3D - 179 240 - -
Pumo7g00422 344 MobiDBLite consensus disorder prediction 54 83 - -
Pumo7g00422 344 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Pumo7g00422 344 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Pumo7g00422 344 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Pumo7g00422 344 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Pumo7g00422 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700|GO:0006355
Pumo7g00422 344 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Pumo7g00422 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 28 302 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00422 Pumo-Chr7 6558737 6563503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00422 23 342 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.731 4.84e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo7g00422 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00422 K08064 - gmx:100500765 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00422 7 6558737 6563503 Pumo7g00422 7 6558737 6563503 ECH
Pumo4g04116 4 81825970 81830602 Pumo7g00422 7 6558737 6563503 PCT