Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00421 ATGGACTCGCGCACGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGTCTCATCAAAGCCCTAACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGCTTTCCCAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCCGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCACAGCGGGCTCCCGAATCTCAGGTTAGACAGCCAAAGCCATTGCAACCAAAAGACGAGGATGAAGAACTAGATGAGCAAGATGACGATGAACATGGAGAGACCTTGTGCGGGGCATGTGGTGAGCACTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGTAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 717 0.4644 MDSRTYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSQRAPESQVRQPKPLQPKDEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00421 238 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Pumo7g00421 238 PANTHER CPG BINDING PROTEIN 7 237 IPR045104 GO:0006355|GO:0042393
Pumo7g00421 238 Pfam PHD-finger 185 234 IPR019787 -
Pumo7g00421 238 SUPERFAMILY FYVE/PHD zinc finger 174 235 IPR011011 -
Pumo7g00421 238 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Pumo7g00421 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 233 IPR013083 -
Pumo7g00421 238 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Pumo7g00421 238 CDD PHD_AL_plant 184 234 IPR044104 -
Pumo7g00421 238 MobiDBLite consensus disorder prediction 144 178 - -
Pumo7g00421 238 SMART PHD_3 184 232 IPR001965 -
Pumo7g00421 238 FunFam PHD finger alfin-like protein 177 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00421 Pumo-Chr7 6550664 6554937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00421 6 237 Alfin-like Transcription Factor Family AT3G42790 73.554 3.32e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pumo7g00421 Alfin 2.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00421 K26274 - gmx:100170700 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00421 7 6550664 6554937 Pumo4g04117 4 81831573 81835629 ECH
Pumo7g00421 7 6550664 6554937 Pumo7g00421 7 6550664 6554937 ECH
Pumo4g04117 4 81831573 81835629 Pumo7g00421 7 6550664 6554937 PCT