Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00392 ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGACGCGCTCATCGCCGGCGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTTCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGTAACGGTGCTCAAGGCTCCAAAGACAAATCTAGGGTTTCCAAGCCCAAAGCTCTCCCTGCTCCTCCTCCTCCTACTACTGCCACCACCTCCACTCCTCAAAACGCTGCTCCCGCTCCTCAAAACGCACCGTCTGATGCTGCTGCCCCTGACGCCTCTCAGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGATTTTTGATGCTCTATCAGCAATGAAAGATAGTAATGGATCCGACGTAAATTCCATTATTCGTTTCATCGAGCAAAAACATAAGATTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAGATGAAAAAGGATGCCCCATCGGGGACAAAATCACCTTCACCAAAACCAAAGGATTTCCGACCACCACAACCACAACGGCAATCCACAGCTTGTGTCAATGATAAAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATACCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCGTTGCTGGTTGAACATGGTGATTCAATGTTACAGCTGGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA 846 0.4598 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKDKSRVSKPKALPAPPPPTTATTSTPQNAAPAPQNAPSDAAAPDASQNDQDVKNPPRYNAMIFDALSAMKDSNGSDVNSIIRFIEQKHKIPQNFRRALSTRLRRLVSQGKLEKVQNCYKMKKDAPSGTKSPSPKPKDFRPPQPQRQSTACVNDKIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHGDSMLQLAKDIYEQCSRGEIILLA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00392 281 MobiDBLite consensus disorder prediction 181 214 - -
Pumo7g00392 281 FunFam Telomere repeat-binding factor 1 8 87 - -
Pumo7g00392 281 PANTHER SINGLE MYB HISTONE 4 1 280 IPR044597 GO:0003691
Pumo7g00392 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Pumo7g00392 281 Pfam linker histone H1 and H5 family 121 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo7g00392 281 Gene3D - 2 58 - -
Pumo7g00392 281 MobiDBLite consensus disorder prediction 52 67 - -
Pumo7g00392 281 FunFam Telomere repeat-binding factor 1 2 58 - -
Pumo7g00392 281 SUPERFAMILY "Winged helix" DNA-binding domain 119 199 IPR036390 -
Pumo7g00392 281 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Pumo7g00392 281 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo7g00392 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo7g00392 281 MobiDBLite consensus disorder prediction 43 121 - -
Pumo7g00392 281 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Pumo7g00392 281 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Pumo7g00392 281 SMART sant 4 59 IPR001005 -
Pumo7g00392 281 CDD H15 121 199 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo7g00392 281 MobiDBLite consensus disorder prediction 88 119 - -
Pumo7g00392 281 CDD SANT_TRF 6 56 - -
Pumo7g00392 281 Gene3D - 116 206 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00392 Pumo-Chr7 5624246 5628029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00392 1 281 Single Myb Histone (SMH) Gene Family AT1G72740 49.823 3.69e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo7g00392 Linker_histone 5.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00392 K09422 - gmx:780537 431.024