Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00388 ATGATGGAACCTCGAGTTGGGAACAAGTTCCGTCTCGGTCGGAAAATTGGTAGCGGATCTTTCGGAGAGATCTATCTCGGAACTAATATTCAGACAAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAGACCAAGCATCCTCAATTGTTGTATGAATCGAAGCTGTATAAAATACTGCAAGGAGGAAATGGGATTCCAAATGTGAAATGGTATGGTGTTGAAGGAGAGTACAATGTGCTCGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTATTCAACTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGTTGAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTGCATCGTGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCGAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATATAGAGACACCACTACACATCAGCATATTCCTTACAGAGAGAACAAGAATTTGACGGGAACTGCTAGGTATGCTAGTATGAATACTCATCTAGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCTGGTACTAAGAAGCAGAAGTATGAGAAGATTAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCATACTTCCATTACTGCCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTCTACGTGACCTTTTTATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTTCAAGTGCCACTGCCCCTGCCCGTGCTATTGCTCCTGCTGCTGGACCAAGTTCTGGTATGCCACCACTGGCTGCAAATACTGATGGACAGTTAGGTGGAGAGGATGGCAGGCAAACTAATTGGCCTTCATCAGATCCTACTCGTAGGAGAAACTCTGGACCTATTGCTAATGATGGAATCTTATCTAGACAAAAGGGCCCAGTTACATATGACTCAACTGGATCTAAAGATGCTATGTTGTCAAGTTCTAATTTCTTCCGGTCAAGTGGATCTGCAAGGCGAGGTGGTGTCCCAGGCAACCGTGAATTCCGTGATGTAGTTGGCAGTGAGACTGAGGCCTCTCGTTCTCTGACCCTGGATTCAAGTCAGGGAGGACTTCGTAAAATCTCTGCCCCTGGTGCTCAGAGAAGTTCAGCTATCATGTCATCTGAGCACAACCGAACATCCTCTGGCAGAAACACATCCAACATAAAGAATTTGGAGACAACTCTTAGGGGTATTGAGAGCCTGCATTTCAATGACGAGAGGGTACATTATTAG 1437 0.4294 MMEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMLNRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSSSATAPARAIAPAAGPSSGMPPLAANTDGQLGGEDGRQTNWPSSDPTRRRNSGPIANDGILSRQKGPVTYDSTGSKDAMLSSSNFFRSSGSARRGGVPGNREFRDVVGSETEASRSLTLDSSQGGLRKISAPGAQRSSAIMSSEHNRTSSGRNTSNIKNLETTLRGIESLHFNDERVHY 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00388 478 MobiDBLite consensus disorder prediction 331 350 - -
Pumo7g00388 478 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g00388 478 FunFam Casein kinase I isoform delta-like 2 309 - -
Pumo7g00388 478 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g00388 478 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g00388 478 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Pumo7g00388 478 MobiDBLite consensus disorder prediction 434 454 - -
Pumo7g00388 478 MobiDBLite consensus disorder prediction 365 389 - -
Pumo7g00388 478 MobiDBLite consensus disorder prediction 307 401 - -
Pumo7g00388 478 MobiDBLite consensus disorder prediction 413 454 - -
Pumo7g00388 478 FunFam Putative Casein kinase I 2 86 - -
Pumo7g00388 478 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Pumo7g00388 478 CDD STKc_CK1_delta_epsilon 9 283 - -
Pumo7g00388 478 SUPERFAMILY Protein kinase-like (PK-like) 6 291 IPR011009 -
Pumo7g00388 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Pumo7g00388 478 PANTHER CASEIN KINASE-RELATED 9 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00388 Pumo-Chr7 5605185 5609438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00388 8 224 EF-hand Containing Proteins AT2G17890 26.222 1.14e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pumo7g00388 Pkinase 1.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00388 K02218 - gmx:100787808 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04134 4 81976343 81981633 Pumo7g00388 7 5605185 5609438 PCT