Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00355 ATGGAGATGAAGGGTTTTATGTTCCACCAACAACAGCAGCAACCAGTTGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCCTCAGGTAACAGAACTGAAATTGGAACCAGTTACATGGCTCCACCACCAACTCAGACTCAACCAGCAAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTTCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGCCAACTTGTCTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAAACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATCACAGGCACAGCCAATAACCCATCACTTCTTCCCCCACAACCTTCTTCCTCTAACCACCACATGAATCTCCAGACCCAATTCAACCCTCAAGACCTCCATGCCTTCCCATTGAAAAAAGAGCAACAAAGTTTCAATGTTAGGCCAGAAATGCCCCCTTGGCTTGGCCCACCAGCAACAGTAGTTGTTGATCATCATCTCTCCTCATCCTCATCCATAATGTTCTCTCCTCCTCCTCTTCCTCCTCCTCCACACCAAGGAAACCCTAACCCTAGCCTTGGTCCCACTCTTGCTGGCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGACAAGGCCCCACCATCAGGCTCACGTGTCCTCTTCTGCTGATTCTGCCACTGCTCATTTTGGCTTGAACTTGTCCTCACGTGAAGACACCACCACCACCACCACCACCACCACCACAACAACTACTAACACTGCTACAGTGTTTAGCCATGGCTTATTATCACCTTTGGGGAATAAAGCTGCTCCTACCACTGCTCCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCCCCTTCTGCCTTTGAAGGAATCCCTTTTGAGGATTCATTTGTTGTTGGTGGCATTCAGAGCTCAAAGAAACTAGATGATCATGATAACATGTATTTGCATGACACATTCTCAAAAACAAGTGGTGCAGCTGGAAATAATGAAGGGTTGACCAGAGATTTCTTGGGTCTTAGGCCCCTCTCTCATACTGATATTCTCACCATTGCTGGCATTGGAAACTGCATCCATGATCAACAAAACCAATCTCAAAAGCCTTGGCAAGATCGAATGGTTTCAAAATTTGATCGGATTGGTTTTCTCCGGTGCATGCTCAAGTTTTTAGGAGTAATTTGTTCTGATGTCCGTGTCAGCCATTGTCTTATTGAAATCAACGAATTCTTGGTGAATTTACCATTACCCCCCTCTCCCCTCTATCGTGTCATTGCAGCAATGGAAATGGACTTTTCCAAGACACCAATGGAGATGGAGTGA 1767 0.4686 MEMKGFMFHQQQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYMAPPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCLHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTANNPSLLPPQPSSSNHHMNLQTQFNPQDLHAFPLKKEQQSFNVRPEMPPWLGPPATVVVDHHLSSSSSIMFSPPPLPPPPHQGNPNPSLGPTLAGYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMTRPHHQAHVSSSADSATAHFGLNLSSREDTTTTTTTTTTTTTNTATVFSHGLLSPLGNKAAPTTAPSLLHDVINSFSSPSAFEGIPFEDSFVVGGIQSSKKLDDHDNMYLHDTFSKTSGAAGNNEGLTRDFLGLRPLSHTDILTIAGIGNCIHDQQNQSQKPWQDRMVSKFDRIGFLRCMLKFLGVICSDVRVSHCLIEINEFLVNLPLPPSPLYRVIAAMEMDFSKTPMEME 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00355 588 MobiDBLite consensus disorder prediction 7 59 - -
Pumo7g00355 588 MobiDBLite consensus disorder prediction 1 69 - -
Pumo7g00355 588 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Pumo7g00355 588 Gene3D Classic Zinc Finger 140 219 - -
Pumo7g00355 588 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Pumo7g00355 588 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pumo7g00355 588 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 505 IPR031140 -
Pumo7g00355 588 MobiDBLite consensus disorder prediction 295 310 - -
Pumo7g00355 588 FunFam protein indeterminate-domain 12-like 65 133 - -
Pumo7g00355 588 MobiDBLite consensus disorder prediction 290 315 - -
Pumo7g00355 588 SMART c2h2final6 86 108 IPR013087 -
Pumo7g00355 588 SMART c2h2final6 127 157 IPR013087 -
Pumo7g00355 588 SMART c2h2final6 162 182 IPR013087 -
Pumo7g00355 588 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
Pumo7g00355 588 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Pumo7g00355 588 Gene3D Classic Zinc Finger 67 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00355 Pumo-Chr7 4681778 4689880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00355 1 347 IDZ Gene Family AT1G55110 60.109 5.95e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo7g00355 zf-C2H2_jaz 8.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00355 K25870 - gmx:100808344 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04150 4 82109066 82112254 Pumo7g00355 7 4681778 4689880 PCT