Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00353 ATGCAGCCGAAATCTCACACCCCTTTTTTTGTTCCTCCCCAAAAGGCCATGAACAATAACAGAATCTCAACAACAAGAAATGGCAACAGCACCACCCAGGCTTGCGCTGCATGCAAGTACCAACGCAGAAAGTGTGCACCCGATTGCATTCTCGCACCCTACTTCCCTCACGATCGCCAACGCCAGTTCCTCAACGCGCACAAGTTGTTCGGCGTAAGCAACATCACCAAGATCATCAAGCTTCTCAGCCCTCACGACAAGGACCAAGCCATGCGCACCATCATTTACCAATCCGACATGCGTGCTACCGATCCTGTTGGCGGTTGCTATAGGTACATTCTCGACCTGCAGGCACAGATCGAGTACTATAGGGCCGAGCTAGAACTTGTCCTTCAACAACTTGCCATTTTCAGAGCCCAGCAACATGCTATCTATGCTCCAAACAACGTTAATGTCGCTGTCAACGGTGATGGTGAGGTTTTGAACGCCGATCCCATGGGGTTGTATAGCCAGCAGCAACATTATCACTGTCTGCAGCCACAACAGGAGCAGTATGTTATGATGCATGAAAATAATGGTCATGGCAGCCAAAACAGCAACGGCACTCCTTTGCAGGAACAGATTAACACGTGGGCTGTGCAGAACACTGCGGTGTCGCTCTCTTCGTTGTCCTTGCAAGCCCAGAGTAGTAATGTTAGCGATGAGTATGATCACAAGCCCGTGATTGACATAGATTCTGATGAGAGAAGTGAGTTAGGCTTCGAGTCTGAAGAATTATTAGTCCATCGCAGTGATGAAGCAGTTTTGTTTAAGATAGAGGATGCATTAATAAAAGCGGAGGCTGACTGCATGCAACAAGCTCAAGACCATGACCTGAAAGGTAGGTGTGTCATCAGTGGAACAGCAGCAGCAACAAGTACAGCAACCACAGCAGGTGAAGCAGTTCTGAAGGAAGTTCATGCAAGCACATATGTTGCTGCAAAATTGTCCTCCAAAGCAAGCCAAGAATACTTGAACTGCAACTAA 1026 0.4795 MQPKSHTPFFVPPQKAMNNNRISTTRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKLLSPHDKDQAMRTIIYQSDMRATDPVGGCYRYILDLQAQIEYYRAELELVLQQLAIFRAQQHAIYAPNNVNVAVNGDGEVLNADPMGLYSQQQHYHCLQPQQEQYVMMHENNGHGSQNSNGTPLQEQINTWAVQNTAVSLSSLSLQAQSSNVSDEYDHKPVIDIDSDERSELGFESEELLVHRSDEAVLFKIEDALIKAEADCMQQAQDHDLKGRCVISGTAAATSTATTAGEAVLKEVHASTYVAAKLSSKASQEYLNCN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00353 341 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 184 - -
Pumo7g00353 341 Pfam Lateral organ boundaries (LOB) domain 34 129 IPR004883 -
Pumo7g00353 341 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00353 Pumo-Chr7 4664090 4669068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00353 33 261 AS2 family AT3G13850 47.737 1.64e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo7g00353 LOB 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00353 - - vum:124830493 490.73