LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g00336	ATGCAAGAAATTACAAAAGCTGGCTTTACTGAACCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTGATAGGAATCGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCGATTCTAAATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACCCGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTCGAAATTGTAATTGCCACTCCAGGAAGGTTAATTGATATGCTTGAGTCAAATCATACCAACTTGCAGAGGATCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTACGGAAGATTGCCTCTCAGATTCGTCCAGACCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTTCTTTATAACCCATACAAAGTAATTATAGGCTCTCCAGATTTAAAAGCTAACCATGCAATTCGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTAAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTTATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGATGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGCAAAAGTCCTATTATGACCTGCAACAGATATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCTGGGTCACTTGAGGATTATGTTCATCGCATTGGGCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTAATAGCCATACTCGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTTAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGA	1170	0.441	MQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILNPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRITYLVLDEADRMLDMGFDPQLRKIASQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTCNRYVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPPPLGPRGFQDRGRGYGSSRPWS	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g00336	389	FunFam	probable ATP-dependent RNA helicase DDX17	1	198	-	-
	Pumo7g00336	389	SMART	ultradead3	8	211	IPR014001	-
	Pumo7g00336	389	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	20	195	IPR014001	-
	Pumo7g00336	389	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	1	17	IPR014014	GO:0003724
	Pumo7g00336	389	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	141	149	IPR000629	-
	Pumo7g00336	389	FunFam	ATP-dependent RNA helicase RhlB	199	365	-	-
	Pumo7g00336	389	CDD	DEADc_DDX5_DDX17	1	195	-	-
	Pumo7g00336	389	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	3	197	IPR027417	-
	Pumo7g00336	389	Gene3D	-	200	363	IPR027417	-
	Pumo7g00336	389	CDD	SF2_C_DEAD	208	332	-	-
	Pumo7g00336	389	Gene3D	-	1	199	IPR027417	-
	Pumo7g00336	389	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	133	358	IPR027417	-
	Pumo7g00336	389	Pfam	DEAD/DEAH box helicase	13	184	IPR011545	GO:0003676\|GO:0005524
	Pumo7g00336	389	SMART	helicmild6	248	323	IPR001650	-
	Pumo7g00336	389	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	6	361	-	-
	Pumo7g00336	389	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	223	362	IPR001650	-
	Pumo7g00336	389	MobiDBLite	consensus disorder prediction	358	389	-	-
	Pumo7g00336	389	Pfam	Helicase conserved C-terminal domain	220	323	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g00336	Pumo-Chr7	4389856	4394596	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g00336	8	343	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.140	4.63e-64	208

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g00336	K12823		-	gmx:100790464	733.406