Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00333 ATGAATATTTTAACCTTAAGAGCAATGGAGGAAACTCCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACTTTTATTTCCCTTCAATCGTTTTTCTTGTTTTCAGTGCATATGTACAAATGGAAATCCTGCTTATGTGACTATAAAGATAGACAACCAGAAGTTTGCAAAAACCAGCCAAGAAAGCAACCGTGTGTGGAACCAAACTTTTCAGATTCAATGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCATGTTCTTCCATATTGGGGAAGTTCCATATTCAGGCTCAGCAGCTATTGAAGAAAGGAGGTTTGATCAACGGGTTCTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTTAAATTGAAGTTCCAGTTATGGTTCAAGCCAGCAGAATTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAGGGAGGCTACCTTCCCACTAAGGTCCAATTGTCAGGTCAAACTTTATCATGATGCTCACCATTCTTCTGCTTTCCAACCTCCCTTTGATCTATGTGGAGCTCCAAAAAAGCTATGGGAGGATGTCTATAAGGCCATTGAGGGTGCAAAGTACTTGGTTTATATTGCAGGCTGGTCTTTCAATCCCATGATGGTTCTGGTTAGAGATCGTCACACAGAAATCCCACATGCCAGAGGAATGAAGTTAGGTGAACTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCGGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTTCCCTTTGTTAAGAACAAAGGTGAATTGAACAACCAAGATGAGGAAGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCATATGTTCCCCGCACTCTTTTCTCACCACCAGAAGACTATAACAGTGGACACAAAAGCACCCAAATCTGTTGGTGACAGAGAACTTATGAGCTTTCTGGGTGGATTAGATTTGTGTGATGGCAGATATGACACAGAGCAACATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGACTTCTACCAAACAAGCATTGAAGGAGCTAGCCTCAATAAAGGAGGGCCAAGAGAACCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGATCCTTCTTTTCTAGTCCCTTCTAGCACCATGGCAAATCTTATGCCTAGGACAAGCTCAAGCACTCCTATAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGATCATGTCTCAGTTGGTGAGTTGTCTACAAAGTTAACTGTGGAGAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATTTACATTGAAAACCAATATTTCATTGGGGGATGCCATTGGTGGAAGAAAGATAGGCACAGTGGCTGCACTAATCTAATTCCAATTGAAATTGCACTCAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAGCCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGGGAACCAGGACACCCTAGAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAGCAGAAGGGACAAGGGGAGTATCTTCCACTAGATTCTCCCCAACCTGAAACTCAATACTGGAATGCTCAAAAAAATAGGAGATTCATGATTTATGTTCACTCCAACTTCATGATAGTGGACGACCTGTACATATTGATAGGTTCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATAGCCATAGGATGCTACCAGTCTCAAGATGGAGATGATAACCACCAAATGAACCTAGATGATATTCAAGCATATAGAATGTCTCTATGGTATGAGCACACTGATAGTGTTGATGAATTGTTCTTAGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGTGCTCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAAATTGTGGACATGGAAGGTGTACACCTTGTAACTTACCCTGTGAGAGTAACACAAGAAGGGTATGTGAAAGACCTCACTGATGGAGTTCATTTTCCTGATACAAATTCTCTAGTGAAAGGCAAGAGGTCTAAAATATTGCCCCCTATCTTTACCAGCTTAGATATATGGTTGAGTTATGAGCACACAAACACACTTCTTGTGTTAAATAAAAGCCCTGTTCAGCCCTGTACATGA 2403 0.4141 MNILTLRAMEETPKLLHGTIEATIFNASPYSLLFPFNRFSCFQCICTNGNPAYVTIKIDNQKFAKTSQESNRVWNQTFQIQCAHPADSCITITLKTSCSSILGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLKLKFQLWFKPAELEPSWAKMLSNDWEFQGLREATFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMMVLVRDRHTEIPHARGMKLGELLKKKAEEGVAVRVMLWDDETSFPFVKNKGELNNQDEEAFAYFNHTKVICRKCPRLHHMFPALFSHHQKTITVDTKAPKSVGDRELMSFLGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSFLVPSSTMANLMPRTSSSTPIERNWKVQVYRSIDHVSVGELSTKLTVERSIHEAYVEAIRRAERFIYIENQYFIGGCHWWKKDRHSGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREQKGQGEYLPLDSPQPETQYWNAQKNRRFMIYVHSNFMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDGDDNHQMNLDDIQAYRMSLWYEHTDSVDELFLEPERLECVERMCSIGDEMWEIYSSEEIVDMEGVHLVTYPVRVTQEGYVKDLTDGVHFPDTNSLVKGKRSKILPPIFTSLDIWLSYEHTNTLLVLNKSPVQPCT 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00333 800 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 620 647 IPR001736 GO:0003824
Pumo7g00333 800 Gene3D C2 domain 46 145 IPR035892 -
Pumo7g00333 800 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 142 IPR035892 -
Pumo7g00333 800 SUPERFAMILY Phospholipase D/nuclease 170 422 - -
Pumo7g00333 800 SUPERFAMILY Phospholipase D/nuclease 440 705 - -
Pumo7g00333 800 PANTHER PHOSPHOLIPASE D 15 757 IPR015679 -
Pumo7g00333 800 Gene3D Endonuclease Chain A 459 664 - -
Pumo7g00333 800 Gene3D Endonuclease Chain A 190 442 - -
Pumo7g00333 800 SMART pld_4 620 647 IPR001736 GO:0003824
Pumo7g00333 800 SMART pld_4 312 349 IPR001736 GO:0003824
Pumo7g00333 800 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 312 349 IPR001736 GO:0003824
Pumo7g00333 800 Pfam Phospholipase D C terminal 693 764 IPR024632 -
Pumo7g00333 800 Pfam Phospholipase D Active site motif 314 349 IPR001736 GO:0003824
Pumo7g00333 800 Pfam Phospholipase D Active site motif 621 647 IPR001736 GO:0003824
Pumo7g00333 800 PIRSF PLD_plant 6 775 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pumo7g00333 800 Pfam C2 domain 52 125 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00333 Pumo-Chr7 4370633 4374321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00333 39 775 Phospholipase D Gene Family (Wang group) AT1G55180 62.299 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00333 K01115 - gmx:100789235 1538.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00333 7 4370633 4374321 Pumo7g00333 7 4370633 4374321 ECH
Pumo4g04168 4 82352786 82355733 Pumo7g00333 7 4370633 4374321 PCT