Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00296 ATGGATGGTCTGAGTTGGGATGCCTCACAACTGTGGAGTACTATTCAGCAACCACCAGACTTTGAAGGAGGCTACTCCATGCCCAATGTTCTCAACCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATGCATACTCAAATTCTGAGATAATGGATGTGATGCAAAAGCAAAACACAAATCTGTCACAGCATGTGTCAACCATGCCAGTGAAATCAGGAGCTGGAGCCAGTTGGGGAGAAGCGTTAACATCCCAATCATACCCATCCCTATCAGTCAATGGACCTCACAGTATGAACCTGATTAGCAACTACATGCCAGATTTCAACATGGCCCACCACCAACAACAGCAACAACAACTTGTCAATGGCTCACAAAATGGGAAGGGTGCTTGCTCTCTTGAGTCTTTTGACTGCTTGATTTCAGCTACCAACAGCAACACAGACACTTCTGTTGAAGATGATGATGGGATCTCAATGATTTTATCTGACTGTGGAAACCTGTGGAACTTCAGTTATGGCAGTGCAGCTTCCACTGGTGAATCTGAGAGCAATGCTTCCAATGGTAGAAACAAAGACATGCAGTGTACTCCAGTCAATGAAGTTGATGAAACAGCTTCTCAAAGCTCCTCGGATAGAGGAAAAACCGTACAATCAGAGGCTAATTGTTCAAAGAGGAGTCATGATCAATCTGAAATGATCAAAGTTGGTGATTCCTGCTTCAGTATTGTTCAGAATTCTTCTTCTGTTGAAGAAGGTGGTTTCAGACTCATCTCAGATAATCCACCAGAATGCAAGAAACCCAGATGGGATATGAGTTCCTCTTCAAATAATATCAATTTCCAGCAACCAACTTCATCCATGGAAGAGCCTGATCCAGAGGTCATTGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCATGGAGATGGTTGAAAAGCCTAAGAGGAAGAATGTGAGGATATCAACTGATCCACAAACAGTGGCTGCAAGGCACAGAAGGGAGAGAATAAGTGAGAAGATTAGGGTTTTGCAGAAACTTGTGCCTGGGGGAAGCAAGATGGACACAGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAAAGTCTAGGCAACAAAGTTGATGCAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACACCCCTCAGTCACATCCATCATTCCCAGGGTTGA 1275 0.44 MDGLSWDASQLWSTIQQPPDFEGGYSMPNVLNQIQEMQKAQTGHAYSNSEIMDVMQKQNTNLSQHVSTMPVKSGAGASWGEALTSQSYPSLSVNGPHSMNLISNYMPDFNMAHHQQQQQQLVNGSQNGKGACSLESFDCLISATNSNTDTSVEDDDGISMILSDCGNLWNFSYGSAASTGESESNASNGRNKDMQCTPVNEVDETASQSSSDRGKTVQSEANCSKRSHDQSEMIKVGDSCFSIVQNSSSVEEGGFRLISDNPPECKKPRWDMSSSSNNINFQQPTSSMEEPDPEVIAQMKEMIYRAAAFRPVNFGMEMVEKPKRKNVRISTDPQTVAARHRRERISEKIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNCPPTSIAFSFNPSFPMQTPLSHIHHSQG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00296 424 SMART finulus 335 384 IPR011598 GO:0046983
Pumo7g00296 424 MobiDBLite consensus disorder prediction 267 290 - -
Pumo7g00296 424 MobiDBLite consensus disorder prediction 201 230 - -
Pumo7g00296 424 MobiDBLite consensus disorder prediction 270 289 - -
Pumo7g00296 424 CDD bHLH_AtIND_like 330 388 - -
Pumo7g00296 424 MobiDBLite consensus disorder prediction 201 224 - -
Pumo7g00296 424 Gene3D - 334 396 IPR036638 GO:0046983
Pumo7g00296 424 Pfam Helix-loop-helix DNA-binding domain 339 378 IPR011598 GO:0046983
Pumo7g00296 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 391 IPR036638 GO:0046983
Pumo7g00296 424 Coils Coil 368 388 - -
Pumo7g00296 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Pumo7g00296 424 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 112 420 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00296 Pumo-Chr7 3845125 3846399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00296 74 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.581 1.44e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00296 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00296 - - gmx:100793975 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00296 7 3845125 3846399 Pumo7g00296 7 3845125 3846399 ECH