Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00271 ATGAAAGCATCAAAAAATGCAACAGAGAAAGAAATGAATCACCACTCACTCTTGGTTACTTCTCAACTCAGAAAATTTCCACTTCTGACAAGCCAGGTCCAGGTGGGGCTATGTTGCCCTCTGCATGGCCTTCTACATCCTACCACCAACACCAGGCTAAAGCTAAAGCTTCATCCATTTCTTCTGCTCCAATCAAGGCCTCAAAACATGATAGAGATGGGAAAGGATGTACCACAATTTTGTTGTGTAGAGAAGAAGACATTCTCACCCTCTTGTGCTAATACAGCTGTGTCCAAAAGGCAAATGCGGCCAATGCGACCGCAATTGTGGTTGCGAACTGCTTCAGTTCCAGTAGTGGGATGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGTGGAAGCTCTTCTAAGCTGCCTTCTGGGTCCCAGCAACATGAAAATGTTGTTCCAGACAAGGTTGCTAGCAAAAAACCTACTGACAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGAGGCCTCCTTGCAGAGATGAAGTTATCTCACATTGCCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTACTGTGCTGGTGGAATTCAAAACAAGGAAGAGGAAGAGAAAGCCAATACGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAACGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCATCTTTTACCCTTGGTAGTAAGCAAGACTAG 894 0.4463 MKASKNATEKEMNHHSLLVTSQLRKFPLLTSQVQVGLCCPLHGLLHPTTNTRLKLKLHPFLLLQSRPQNMIEMGKDVPQFCCVEKKTFSPSCANTAVSKRQMRPMRPQLWLRTASVPVVGWPPIRSFRKNLASGSSSKLPSGSQQHENVVPDKVASKKPTDNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDELFRGLLAEMKLSHIASSQCCSGQRDYCAGGIQNKEEEEKANTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSDLPSFTLGSKQD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00271 297 Pfam AUX/IAA family 82 287 IPR033389 -
Pumo7g00271 297 SUPERFAMILY CAD & PB1 domains 159 281 - -
Pumo7g00271 297 FunFam Auxin-responsive protein 161 296 - -
Pumo7g00271 297 Gene3D - 161 295 - -
Pumo7g00271 297 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 286 IPR003311 GO:0005634|GO:0006355
Pumo7g00271 297 ProSiteProfiles PB1 domain profile. 166 284 IPR000270 GO:0005515
Pumo7g00271 297 MobiDBLite consensus disorder prediction 132 150 - -
Pumo7g00271 297 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00271 Pumo-Chr7 3216866 3220265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00271 151 295 B3 DNA Binding Superfamily AT4G23980 27.586 1.88e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo7g00271 AUX_IAA 4e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00271 K14484 - gmx:100793822 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00271 7 3216866 3220265 Pumo4g04183 4 82730380 82734556 ECH
Pumo7g00271 7 3216866 3220265 Pumo7g00271 7 3216866 3220265 ECH
Pumo4g04183 4 82730380 82734556 Pumo7g00271 7 3216866 3220265 PCT