Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00260 ATGCAGGTGTTGCGTAGCGGAGTGCGGAAGGGTCGGGCATCAGCAGCGAAGCAACAACAACCACAGCAGGAGCAGCCGCAACAGCAGCAGAGTCCGGTGGTGGAAGGGGAGGCGATTGCGACGAGGACTCGTCGGCGGCGTGCGGCGGCGTTGGCAGCGGCAGAGGCAGTGCCGAAGAGTGATAACAATAATAATAACAACGAGCAACAGCAACAGCAACAGCAGGAGCAGGAGCGGGTGGTGGCGGTAAATGAGAACGTAGCTGTTCCGGCGAACGAAGAAGAGAATCGGGGAGTGGCGGAAGGTGTTGTCGGGGGTGGTGCTGCTGCGGAGAGGGAAGAGGTTCGGGACAAAGCGATGATGGGTGGGGGTGACAGTGGGGGTAAAAGCAATGATAAGGCCAATGCTGGTGGTGAAGATGACGCCAATACCCCTCAGGTTCCTCAGAAGATTCAAGTAGGTAATTCCCCTTGGTATAAAGTCGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTTGGACGGCGTTCTAGTGGAAATTTGAATGAGAGAACTGGACCTGGTGCTGTAGAGGTTGCATTAAAGCTCGAGCATAGAACTAGTAAAGGATGTACCTATGGGCCACCCTACGAGTGGCAGGTGTACAACACTCTCGGTGGCAGTCATGGTGTGCCTCAAGTGCACTACAAGGGCAGGCAGGGTGACTATTATGTCATGGTCATGGATATGCTGGGACCTAGCCTCTGGGATGTTTGGAACAATAACAATCACAAAATGACCACTGAAATGGTTGCTTGCATTGCCATTGAAGCAATATCTATATTGGAAAAAATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACCCCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAGCTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCAGATGTTTTCAGAGGCACGGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGATTTGGAATCCCTTGCATATACACTGATTTTTCTTCTTCGAGGTCGCCTTCCTTGGCAGGGGTTCCAGGGAGAAAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGACCCTATGCTGCTTTAGTCCCGTACCTTTTAAGCAGTTTGTTGAGCATGTTGTAAACTTGAAGTTTGAAGAGGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCTAACCCAGATATTAGACCAATTAATACTGAAGGTGCACAGAAGCTCATTGGTCATAAGAGAGGCCGGTTGGCGATGGAAGAAGAGGACGACGAACAACCCAAAAAGAAGATTCGTATTGGTTTGCCAGCATCCCAGTGGATAAGTGTTTACAACGCCCGTAGACCGATGAAACAAAGATATCACTACAATGTGTCAGATACAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTGCTTCATGTCAGAACCTATGGGCGTTAATCATGGATGCAGGGACAGGTTTCACTGCCCAAGTTTACGAACTCTCACCCTTCTTTCTCCATAAGGAATGGATCATGGAGCACTGGGAAAAAAATTACTATATCAGTGCAATTGCTGGAGCTGTAAACGGGAGTTCGCTGGTAGTAATGTCGAAGGGCACACAGTATTTGCAGCAATCATACAAAGTTAGCGATTCATTTCCTTTCAAGTGGATTAACAAAAAGTGGAGGGAAGGCTTTTACGTTACTGCAATGGCCACCTCAGGGGCCAGATGGGGAGTAGTTATGTCTCGTGGCGCAGGATTTTCAGAGCAGGTGGTTGAACTAGACTTTCTGTATCCTAGTGAGGGGATTCACAAGCGTTGGGATGGCGGATATCGAATCACAGCTACTGCTGCAACTTGGGACCAGGCTGCTTTCGTCCTGAGTGTGCCAAGGAGGAAGCCTGTGGATGAAACTCAGGAAACTCTTAGGACTTCTGCTTTTCCTAGCACACATGTCAAGGATAAGTGGGCAAAGAACCTCTACATTGCTTCTATTTGCTACGGACGTACAGTTTCTTGA 2169 0.4813 MQVLRSGVRKGRASAAKQQQPQQEQPQQQQSPVVEGEAIATRTRRRRAAALAAAEAVPKSDNNNNNNEQQQQQQQEQERVVAVNENVAVPANEEENRGVAEGVVGGGAAAEREEVRDKAMMGGGDSGGKSNDKANAGGEDDANTPQVPQKIQVGNSPWYKVERKLGKGGFGQVYVGRRSSGNLNERTGPGAVEVALKLEHRTSKGCTYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDMLGPSLWDVWNNNNHKMTTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATKWRDSTTGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTSPETLCCFSPVPFKQFVEHVVNLKFEEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKIRIGLPASQWISVYNARRPMKQRYHYNVSDTRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTAQVYELSPFFLHKEWIMEHWEKNYYISAIAGAVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATSGARWGVVMSRGAGFSEQVVELDFLYPSEGIHKRWDGGYRITATAATWDQAAFVLSVPRRKPVDETQETLRTSAFPSTHVKDKWAKNLYIASICYGRTVS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00260 722 SMART serkin_6 159 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g00260 722 SUPERFAMILY Protein kinase-like (PK-like) 159 438 IPR011009 -
Pumo7g00260 722 CDD STKc_CK1 159 434 - -
Pumo7g00260 722 Gene3D Transferase(Phosphotransferase) domain 1 124 478 - -
Pumo7g00260 722 MobiDBLite consensus disorder prediction 1 152 - -
Pumo7g00260 722 PANTHER CASEIN KINASE-RELATED 153 692 - -
Pumo7g00260 722 FunFam casein kinase 1-like protein HD16 131 478 - -
Pumo7g00260 722 ProSitePatterns Protein kinases ATP-binding region signature. 165 197 IPR017441 GO:0005524
Pumo7g00260 722 Coils Coil 59 86 - -
Pumo7g00260 722 MobiDBLite consensus disorder prediction 13 36 - -
Pumo7g00260 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Pumo7g00260 722 MobiDBLite consensus disorder prediction 58 81 - -
Pumo7g00260 722 ProSiteProfiles Protein kinase domain profile. 159 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo7g00260 722 Pfam Protein kinase domain 159 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00260 Pumo-Chr7 2959840 2964399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00260 159 383 AGC Kinase Gene Family AT3G08730 23.348 7.98e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pumo7g00260 Pkinase 1.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00260 - - gmx:100799630 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00260 7 2959840 2964399 Pumo7g00260 7 2959840 2964399 ECH