Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00256 ATGAAAACAATCAAGCAGAGTCGATTCCAATTCGCGCAGGCCGATGGACGGAGATCGGTGAAGCGGCGTCGTTTGATCCCGCCAACCAGATCGTTGCACGAGATTCTTCTTCACGTGAGGTTTGAATTGGCTGCGGCAATAATAATGTCCTGCAAGGATGGTAGCAAAAACGGAAACGCAATGGATAACGGGAAGTATGTCCGTTACACGCCTGAGCAGGTTGAAGCCTTGGAGAGGCTCTATCACGATTGCCCCAAACCAAGTTCCATTCGCCGCCAGCAGCTCATACGCGAGTGCCCCATTCTCTCTAACATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGCCTGCAAGCTGTAAATAGGAAGTTGACTGCGATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAACAGGTGTCTCAACTGGTGTATGAAAATGGCTATTTTCGTCAACACACCCAAAATACTACACAGCCAACCAAAGATACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCACAGTTTGACAACTCAACATCCCCCACGGGATGCGAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCTCCTGCTCGAGACTTTTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGGTACCTGATCAGACCTTGTGAAGGAGGCGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCAGAAGTGCTACGTCCTCTGTACGAATCATCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTCACTGGGTGGGGTAGACGACCAGCAGCACTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACTATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCAATGCTATTACAGAATGTCCCCCCTGCCATTCTCCTACGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCTTATCAGGATCTCGTGTTGGAAACTATGGAGGTCAAGTTATACTCCCTCTAGCACACACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGATGACACAATAATGCCCAGAGAAATGCTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCCCTTGATGTTGGCCCCAGTGGAAACCGAGCTTCGAATGAATGTGCTGGAAATTCCAGCTGCATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAGGCCATATGCAAGAGCATGCAGCATCTATGGCACGTCAATATGTTCGGAGCATTATATCATCGGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACCCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTAGAGACCACCCTAGTTGCTTTACAAGATATAACTTTAGAGAAAATATTTGACGATCATGGTCGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTGTCTCATTCGAAAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2661 0.4652 MKTIKQSRFQFAQADGRRSVKRRRLIPPTRSLHEILLHVRFELAAAIIMSCKDGSKNGNAMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTQPTKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPDDTIMPREMLLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRASNECAGNSSCMRSVMTIAFEFAFEGHMQEHAASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSFERVVAWKVLNEEENAHCICFMFMNWSFV 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00256 886 FunFam Homeobox-leucine zipper protein REVOLUTA 65 120 - -
Pumo7g00256 886 ProSiteProfiles 'Homeobox' domain profile. 60 124 IPR001356 GO:0003677
Pumo7g00256 886 SUPERFAMILY Bet v1-like 445 644 - -
Pumo7g00256 886 Pfam Homeodomain 65 123 IPR001356 GO:0003677
Pumo7g00256 886 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Pumo7g00256 886 CDD bZIP 117 156 - -
Pumo7g00256 886 Gene3D - 57 131 - -
Pumo7g00256 886 Pfam START domain 209 417 IPR002913 GO:0008289
Pumo7g00256 886 Coils Coil 130 161 - -
Pumo7g00256 886 SMART START_1 208 418 IPR002913 GO:0008289
Pumo7g00256 886 SMART HOX_1 62 128 IPR001356 GO:0003677
Pumo7g00256 886 Pfam MEKHLA domain 743 885 IPR013978 -
Pumo7g00256 886 FunFam homeobox-leucine zipper protein ATHB-15 244 425 - -
Pumo7g00256 886 MobiDBLite consensus disorder prediction 169 198 - -
Pumo7g00256 886 CDD homeodomain 65 125 IPR001356 GO:0003677
Pumo7g00256 886 Gene3D - 243 424 IPR023393 -
Pumo7g00256 886 ProSiteProfiles START domain profile. 199 413 IPR002913 GO:0008289
Pumo7g00256 886 MobiDBLite consensus disorder prediction 169 201 - -
Pumo7g00256 886 CDD START_ArGLABRA2_like 203 418 - -
Pumo7g00256 886 SUPERFAMILY Bet v1-like 208 418 - -
Pumo7g00256 886 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 61 886 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00256 Pumo-Chr7 2872917 2881103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00256 49 838 Homeobox Transcription Factor Family AT1G52150 84.848 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo7g00256 START 1.6e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00256 K09338 - gmx:100800165 1640.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00256 7 2872917 2881103 Pumo7g00256 7 2872917 2881103 ECH
Pumo4g04199 4 82896713 82900538 Pumo7g00256 7 2872917 2881103 PCT