Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00255 ATGTCCGACGGTTTCTTCGACAATGTCGCCGGAAACTCCACCGACTCCTCCACCGTCACAGCCGTCGACAGCTGCAACTCCTCAATTTCCTGCAGCCACAACCGCTTCGCCTCCGCCATTGTCCCTCGCAGCTTCACCGGTGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAGGAGGAGCTGAAGACGCTGCAGCTACTCTCCGGCGGCGCCGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCGGAATCGTCCTCCTCCACCGACACGCTTCCGCCGTTCGCTCCAGACGACACGGCGCGAAACGCACCGTTTCTCCACTCGGAAACGCCTCTCCCTGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACGCGCCTGCTGCACCTGGTCGCGCCGGAGCAGGAGAAGCCGCCGCAGGCGAAGGCGGCGCAGGCGAAGAAGAGAGAGGGAACGAATGCGGAGTGTTCCGGACGAAAATGCCTGCACTGCGGAGCGGAGAAGACGCCGCAGTGGCGAACGGGACCGATGGGACCGAAAACTCTGTGCAACGCGTGCGGCGTGAGGTTCAAGTCCGGTAGGCTGGTGCCGGAGTACCGGCCAGCGGCGAGTCCAACGTTCATGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGCTGCAGCGACAGCAGCATCAGCAATTGATGAGTCAAAGTTCAATTTTCGGCGTATCCAACGGTGGAGATGAATTCTTAATCCATCATCATCATCTTCACCACCATTGTGGGCCAGACTTTAGACACGTTATTTAG 897 0.6042 MSDGFFDNVAGNSTDSSTVTAVDSCNSSISCSHNRFASAIVPRSFTGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGGAASTAIGAKPQTPESSSSTDTLPPFAPDDTARNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVAPEQEKPPQAKAAQAKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFMSTKHSNSHRKVLELRRQKELQRQQHQQLMSQSSIFGVSNGGDEFLIHHHHLHHHCGPDFRHVI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00255 298 PIRSF Txn_fac_GATA_plant 3 274 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pumo7g00255 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 246 - -
Pumo7g00255 298 PANTHER GATA TRANSCRIPTION FACTOR 32 261 - -
Pumo7g00255 298 MobiDBLite consensus disorder prediction 96 183 - -
Pumo7g00255 298 FunFam GATA transcription factor 177 263 - -
Pumo7g00255 298 MobiDBLite consensus disorder prediction 168 183 - -
Pumo7g00255 298 Coils Coil 246 266 - -
Pumo7g00255 298 Gene3D - 182 232 IPR013088 GO:0006355|GO:0008270
Pumo7g00255 298 ProSiteProfiles GATA-type zinc finger domain profile. 182 218 IPR000679 GO:0006355|GO:0043565
Pumo7g00255 298 ProSitePatterns GATA-type zinc finger domain. 188 213 IPR000679 GO:0006355|GO:0043565
Pumo7g00255 298 MobiDBLite consensus disorder prediction 99 115 - -
Pumo7g00255 298 Pfam GATA zinc finger 188 221 IPR000679 GO:0006355|GO:0043565
Pumo7g00255 298 SMART GATA_3 182 232 IPR000679 GO:0006355|GO:0043565
Pumo7g00255 298 CDD ZnF_GATA 187 234 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00255 Pumo-Chr7 2861942 2863523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00255 3 298 C2C2-Gata Transcription Factor Family AT4G32890 46.278 7.14e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo7g00255 GATA 3.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00255 - - gmx:100776605 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00255 7 2861942 2863523 Pumo7g00255 7 2861942 2863523 ECH