Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00250 ATGTATCTGCCTCTGCCCCCTACATTCTGCTCCACAAACCAAAACCAAAACCAAAAACATAAACATTCCCACTCACTCACAGTCACAATGACACAAACACAAACAACCTCTTCCGAAACAACCTCCTCTTCTTCTTCTACATCTTCACCGTCCTCGCCCTCACATTCGGGCCCAAAGGCCCTGGCCCAAAAGCAGAGCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGCGTGCGGAAGCGCAACTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCGCGCAAGAAGTCCAGAATCTGGCTCGGAACCTTCGCGACTCCCGAAATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAGGGCCAGTCCGCAATTCTCAACTTCCCCGAAATTGCAGACCTGCTCCCCCGCCCCGTCACGTGTGCCCCACGTGACATCCAGGCCGCGGCCACAGCCGCGGCCTCCATGGTTAAATTCGACCCTGTAACACAATCCTCGGACTCGGAGTCTTCGGAGCTGAGTGAGATTGTCGAACTTCCCAACATTGAAGACAGCAGCTTTGACTCCGTTGACTCCGCACCCGAGTTCCCGTTGGTCGATGTTGTGGACAGTTGGGTGTTTCCTCCAATGGGGTCAGAGGGAATCGAGTTCTGTGCCGCTTTTTCTGATGAGTTGTTTCCGCGTAACTCTGAGATAGAGATAGTATTACCCATTTGGGATTGA 738 0.5515 MYLPLPPTFCSTNQNQNQKHKHSHSLTVTMTQTQTTSSETTSSSSSTSSPSSPSHSGPKALAQKQSKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPVTCAPRDIQAAATAAASMVKFDPVTQSSDSESSELSEIVELPNIEDSSFDSVDSAPEFPLVDVVDSWVFPPMGSEGIEFCAAFSDELFPRNSEIEIVLPIWD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00250 245 SUPERFAMILY DNA-binding domain 77 134 IPR016177 GO:0003677
Pumo7g00250 245 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Pumo7g00250 245 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Pumo7g00250 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 191 - -
Pumo7g00250 245 MobiDBLite consensus disorder prediction 13 61 - -
Pumo7g00250 245 Gene3D AP2/ERF domain 77 136 IPR036955 GO:0003700|GO:0006355
Pumo7g00250 245 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Pumo7g00250 245 MobiDBLite consensus disorder prediction 13 78 - -
Pumo7g00250 245 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Pumo7g00250 245 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Pumo7g00250 245 CDD AP2 78 135 IPR001471 GO:0003700|GO:0006355
Pumo7g00250 245 MobiDBLite consensus disorder prediction 64 78 - -
Pumo7g00250 245 FunFam Ethylene-responsive transcription factor 2 76 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00250 Pumo-Chr7 2784913 2786193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00250 62 214 AP2-EREBP Transcription Factor Family AT5G11590 56.250 1.10e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo7g00250 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00250 - K09286 gmx:100801780 345.125