Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00243 ATGACTACACCCTTGGAACATGATTACATAGGCTTATCAGAGGCTCCATCAATGGAGAAAAGTTGTGATAAGATATCCTCTTCAGTTTCCTCCAACCTCTCCTCTGAGGATGAGAACACTTCGTCTCTGAACTTCAAGGAGACAGAGTTGAGGCTTGGCCTGCCTGGTTCTGAGTCTCCTGAGAACAACAAATCAGGAGCTGCAGCAGGGTTCTCTCTCTTTGGCAAAGATTTGCAGAATAATGGCTATTCTGCTTCTTCAACCCCTTCCAAGAACCTCAAGAGGGGCTTCTCTGATGCCATTAGCTCTTCTTCTTCCTCTTCTGGGAAATGGATTTTCTCAGCAAGTGATGCAGCAACTGAGGCTGATTTGGGAAATGGTTCTAATGCCTCTGCACGATGCAACAAAGAGGTTGATATGGTTCCTCACTCTGAGAAGCCGGCTCAGGTTGCTGCAACAAATGACCATGCTACTGCTCCTGCTCCAAATTTTTTTGGCAGAGCACAAGTTGTGGGGTGGCCACCAATTCGATCTTTTCGAAAGAACACAATGGCCTATAACTTGGCAAAATGCAACAACGAAGCTGAGGAGAAATCAGGAGTTGGTTGTCTTTATGTAAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCTACAGCAACTATATTGAACTTTCTTCAGCTCTTGAGAAAATGTTCAGATGCTTTACCATTGGTCAATGCAATTCTCGTGCACTTCCTGGGAAGTATGGATTAAGTGAGAGTGCATTCAGGGATCTTGTTGATGGCTCTGAATATGTTCTTACATATGAAGATAAGGATGGAGACTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCAGTGAGTCATGTAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATCGGGCTAGCTCCAAGGGGTACGTATGGAAAAATCTAG 963 0.4476 MTTPLEHDYIGLSEAPSMEKSCDKISSSVSSNLSSEDENTSSLNFKETELRLGLPGSESPENNKSGAAAGFSLFGKDLQNNGYSASSTPSKNLKRGFSDAISSSSSSSGKWIFSASDAATEADLGNGSNASARCNKEVDMVPHSEKPAQVAATNDHATAPAPNFFGRAQVVGWPPIRSFRKNTMAYNLAKCNNEAEEKSGVGCLYVKVSMDGAPYLRKVDLKTYSNYIELSSALEKMFRCFTIGQCNSRALPGKYGLSESAFRDLVDGSEYVLTYEDKDGDWMLVGDVPWEMFSESCKKLRIMKGSEAIGLAPRGTYGKI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00243 320 MobiDBLite consensus disorder prediction 21 68 - -
Pumo7g00243 320 Gene3D - 197 316 - -
Pumo7g00243 320 MobiDBLite consensus disorder prediction 21 47 - -
Pumo7g00243 320 ProSiteProfiles PB1 domain profile. 203 305 IPR000270 GO:0005515
Pumo7g00243 320 SUPERFAMILY CAD & PB1 domains 203 304 - -
Pumo7g00243 320 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 310 IPR003311 GO:0005634|GO:0006355
Pumo7g00243 320 FunFam Auxin-responsive protein 198 315 - -
Pumo7g00243 320 Pfam AUX/IAA family 47 314 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00243 Pumo-Chr7 2717776 2720961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00243 207 313 B3 DNA Binding Superfamily AT4G23980 30.841 6.21e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo7g00243 AUX_IAA 2.6e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00243 K14484 - gmx:100795203 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00243 7 2717776 2720961 Pumo7g00243 7 2717776 2720961 ECH