Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00228 ATGCCGGGGAGGCGGCAGGAGACGTCCGGCATGGAGGTGGTCGGCGATGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGCGACAACTCAGGACCCGTGAGATCCAGGTCAGAAGAATATTTTGATGGAGAAGGTGCTCATGAGGACGATGACGACGACAACAACGATGACGACGACAAGAACAGGAAGAAGAAGAAGAGGAAGTATCACAGACACACCGCTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTAAGGGAGGAAAATAAGGCCATGCGAGAGACCATAAACAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCCACCATGTCCACTGAAGAAAAACAACTTCTTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAACAGCTTTAGGGAAATGCTCACCAAGGACAATGTCCCCTTCATCTTCTGCTGGCCATGGTGAGGAAGAGAATAGAAGCTCTTTGGATTTTTACAATGGAATTTTTGGGCTCGAGAAGTCAAGGATAATGGATATAGCAAACTGGGCAACGGAGGAGCTCATAAAGATGGCAAATATGGGGGAACCGTTATGGGTTCGTAGCGTTGAGACGGGTCGCGAAATACTTAACTACGATGAATATGTGAAGGAGTTCGCAGTTGAAAATTCGGGTAGTGAAAGGCCAAAGACATTCATCGAAGCCTCAAGAGAAACTCGGGTTGTTTTTATGGATCTTCCTCGGCTTCTCCAAAGTTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGCTTAATATCGAAGGCTGCAACTGTTGATGTTATATGCAATGGCGAAGGTTCTAACAAGAATGGTGCAGTGCAATTGATGTTTGCTGAGTTGCAAATGCTCACTCCGATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTGAGTGATGAACAGTGGGCAATAGTTGATGTCTCCATAGACAAAGTAAAAGACAACATTGACGTGTCCCTTGTGAAATGCAGAAAACGCCCATCTGGGTGTATTATTGAGGACAAATCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAAAAGAGCACAATTCATACGTTGTATCGAACCATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGACATTGGATAGCAACACTACAACTTCAATGCGAACGTTTAGTTTTTTACATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACGTTGGCTGGGAGGAAAAGCATTTTGAAGCTGGCACAAAGAATGACGTGGAGTTTCTGCCATGCAGTTGGTGCATCAAGTTTTCATACTTGGACCAAGGTCACAAGCAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCCGTTTCTTCTGTGTGGCTTCCTATCTCTCCTAATGTGCTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATCATGTCCAGTGGTGGGTCAGTGCAGTCCATTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAACGTTGTAAACATCCAAAAAATACAATTAGAAGATAACAGTGTGTGGATATTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTAGTATATGCTCCTGTGGAATTTGCTGGTATACAGTCTGTGCTGACAGGATGTGATTCAAGATTCTCAATTCTTCCTGATGGGGTTGAGGGAAGGCCATTGGTGATTACGTCAAGGCAAGAAGAAAAATACACTGAAGGAGGGTCTTTATTTACAATGGCATTTCAGATCCTTGCCAACCCTTCTCCTACTGCCAAGTTAACAATGGAGTCTGTGGAATCGGTCAATAATATTGTGTCTTGTACATTAAGAAATATTAGAACCAGTTTGCAGTGTGAAGATGGTAACAACGAAAAAGCGTTACCGACGGATTTTCAAACGAAAAATCAGTCAAAAAATTTGGCACCTTTAAGTAGGAAGAATTCTGAAGATTGCACTACGCATCCTCAACATGCGCTTCTCCGCCTTCCTCGACCCACTGACGATGAGGTCGATGCCACCGCCAGCCTCACCCCTTGTATGATTGGATGTAAGAGCAAAAAGGGAGTGGGATTCCCTTGTTCCTACCCTTTGGCGAAGGGGTGA 2379 0.4481 MPGRRQETSGMEVVGDEVRREDTVEISSDNSGPVRSRSEEYFDGEGAHEDDDDDNNDDDDKNRKKKKRKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELDKLREENKAMRETINKSCCPNCGMVTATIDATMSTEEKQLLIENAKLKAEVEKLRTALGKCSPRTMSPSSSAGHGEEENRSSLDFYNGIFGLEKSRIMDIANWATEELIKMANMGEPLWVRSVETGREILNYDEYVKEFAVENSGSERPKTFIEASRETRVVFMDLPRLLQSFLDVNQWKEMFPCLISKAATVDVICNGEGSNKNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIVDVSIDKVKDNIDVSLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLYRTIVNSGLAFGARHWIATLQLQCERLVFYMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPISPNVLFDFLRDEARRSEWDIMSSGGSVQSIANLAKGKDRGNVVNIQKIQLEDNSVWILQDSCTSAYESMVVYAPVEFAGIQSVLTGCDSRFSILPDGVEGRPLVITSRQEEKYTEGGSLFTMAFQILANPSPTAKLTMESVESVNNIVSCTLRNIRTSLQCEDGNNEKALPTDFQTKNQSKNLAPLSRKNSEDCTTHPQHALLRLPRPTDDEVDATASLTPCMIGCKSKKGVGFPCSYPLAKG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00228 792 MobiDBLite consensus disorder prediction 726 748 - -
Pumo7g00228 792 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Pumo7g00228 792 SUPERFAMILY Bet v1-like 490 701 - -
Pumo7g00228 792 FunFam Homeobox-leucine zipper protein HDG1 52 140 - -
Pumo7g00228 792 SMART START_1 236 460 IPR002913 GO:0008289
Pumo7g00228 792 SMART HOX_1 66 128 IPR001356 GO:0003677
Pumo7g00228 792 MobiDBLite consensus disorder prediction 1 73 - -
Pumo7g00228 792 MobiDBLite consensus disorder prediction 10 26 - -
Pumo7g00228 792 SUPERFAMILY Homeodomain-like 54 125 IPR009057 -
Pumo7g00228 792 SUPERFAMILY Bet v1-like 229 460 - -
Pumo7g00228 792 Pfam START domain 238 460 IPR002913 GO:0008289
Pumo7g00228 792 Gene3D - 52 136 - -
Pumo7g00228 792 MobiDBLite consensus disorder prediction 726 741 - -
Pumo7g00228 792 ProSiteProfiles START domain profile. 227 463 IPR002913 GO:0008289
Pumo7g00228 792 Coils Coil 174 194 - -
Pumo7g00228 792 FunFam Homeobox-leucine zipper protein GLABRA 2 236 459 - -
Pumo7g00228 792 CDD START_ArGLABRA2_like 231 459 - -
Pumo7g00228 792 Pfam Homeodomain 67 122 IPR001356 GO:0003677
Pumo7g00228 792 CDD homeodomain 71 122 IPR001356 GO:0003677
Pumo7g00228 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 708 IPR042160 -
Pumo7g00228 792 MobiDBLite consensus disorder prediction 197 216 - -
Pumo7g00228 792 Coils Coil 123 150 - -
Pumo7g00228 792 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Pumo7g00228 792 MobiDBLite consensus disorder prediction 199 213 - -
Pumo7g00228 792 Gene3D - 299 458 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00228 Pumo-Chr7 2563101 2575356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00228 26 712 Homeobox Transcription Factor Family AT1G79840 63.727 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo7g00228 START 3.1e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00228 K09338 - gmx:100806193 1287.71