Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00195 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTACCCGATGCCGCCGAGCATGTAAGTGTGGTCACCAAGAATGAGAAGAAGAGGGCATTCTCGGAAATTGACAATGGTGTTGGAGATGAAAATAGCTCCTCCGGTGACCGGAAAATCGAGACCAAAAGTCAAGTCGTGGGGTGGCCTCCGGTGTGCTCGTACCGGAAGAAGAACAGCATGAGCGAAGCTTCAAAAATGTACGTCAAGGTTAGCATGGACGGTGCTCCCTTCTTGCGTAAAATCGATTTGGGTCTGCATAAGGGGTACTCAGATTTAGCCTTGGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCGTTGAAGAATGCGGACAACTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTATGGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCGAAGGGGTTCGGTTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGCAAAGTGA 573 0.4764 MAKEGLGLEITELRLGLPDAAEHVSVVTKNEKKRAFSEIDNGVGDENSSSGDRKIETKSQVVGWPPVCSYRKKNSMSEASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALEKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRSDAKGFGLQPKGSLKGFIESVAK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00195 190 ProSiteProfiles PB1 domain profile. 81 169 IPR000270 GO:0005515
Pumo7g00195 190 FunFam Auxin-responsive protein 76 177 - -
Pumo7g00195 190 Pfam AUX/IAA family 47 173 IPR033389 -
Pumo7g00195 190 Gene3D - 75 178 - -
Pumo7g00195 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 171 IPR003311 GO:0005634|GO:0006355
Pumo7g00195 190 SUPERFAMILY CAD & PB1 domains 74 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00195 Pumo-Chr7 2213294 2216938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00195 73 188 B3 DNA Binding Superfamily AT4G23980 33.621 8.19e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo7g00195 AUX_IAA 7.5e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00195 K14484 - gmx:547784 349.747