Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00193 ATGGTTGGAGCTTCGTTAGCAGGGTTGCAAGAGCACCTCAAGTTAGCCAGAGACTACGCTCTCGAAGGGCTCTACGACACCTCCATCATCTTCTTCGACGGTGCCCTTGCCCAGATCAACAAGCACCTAAGCACCGTTGAAGACCCTTTAATCCGCGCAAAATGGATGAATGTAAAGAAAGCACTTTCGGAAGAAACAGAAGTTGTGAAACAGCTAGATGCAGAGAGAAGGGCTTTCAAAGACAACCCCATTGGAAGACGCCCTGCTTCGCCTCCCATTTCGGTGAAGTCATCATCGTCTTTTGTTTTTCAGCCGTTGGATGAGTATCCCACTTCATCAAGCGGTCCTGGTCCCGTTGATGATCCTGATGTGTGGCGGCCGCCCAGCAGGGACACCACCAGTAGGAGACCGGCGAGGTCCGGTCAGGCGGCTGCTCGGAAATCGGCGCAAGATGGGGCTTGGGCGCGAGGTGCTACAACCAGAAGTGGTGCCACTGGGCGTGGTGCTAAAGCTGGTGCTACCAGTAGGGTTAACTCCGGGACCCGAGCATCCACTACTGGCAAGAAAGGTGCTGCTGCTTCTGGAAAGGCTAGCAAGACGGATACTGCAGCTGTAACTAATGGTGATGCTGAAGACGGTAAGCCAAAGAAGCCTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCTTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGACCGTGGAAAGGTGTCCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCTACTTTAGCTTCTAAATGGCGTGGGGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCCCCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCATCTGGTGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCTACTAACTTCCCTTGGGATATAGATGAGGCACTAAGGAGACGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTCGAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGCGATGCTTCCTTGAACGGTATGAGGCGTAAGATAGCAGGAAAGACTCGCGACGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGGAAAGGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCTGCATAA 1590 0.4874 MVGASLAGLQEHLKLARDYALEGLYDTSIIFFDGALAQINKHLSTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKDNPIGRRPASPPISVKSSSSFVFQPLDEYPTSSSGPGPVDDPDVWRPPSRDTTSRRPARSGQAAARKSAQDGAWARGATTRSGATGRGAKAGATSRVNSGTRASTTGKKGAAASGKASKTDTAAVTNGDAEDGKPKKPQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALGKVQRSVSQADIERHEKWFTEFGSA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00193 529 CDD Kp60-NTD 7 75 - -
Pumo7g00193 529 Gene3D - 3 80 - -
Pumo7g00193 529 MobiDBLite consensus disorder prediction 210 224 - -
Pumo7g00193 529 FunFam Katanin p60 ATPase-containing subunit A1 239 407 - -
Pumo7g00193 529 Gene3D - 419 505 - -
Pumo7g00193 529 Pfam Vps4 C terminal oligomerisation domain 482 527 IPR015415 -
Pumo7g00193 529 MobiDBLite consensus disorder prediction 105 224 - -
Pumo7g00193 529 Pfam ATPase family associated with various cellular activities (AAA) 281 418 IPR003959 GO:0005524|GO:0016887
Pumo7g00193 529 PANTHER AAA DOMAIN-CONTAINING 25 528 - -
Pumo7g00193 529 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 529 IPR028596 GO:0008017|GO:0008568|GO:0051013
Pumo7g00193 529 FunFam Katanin p60 ATPase-containing subunit A1 419 505 - -
Pumo7g00193 529 SMART AAA_5 277 420 IPR003593 GO:0016887
Pumo7g00193 529 MobiDBLite consensus disorder prediction 172 188 - -
Pumo7g00193 529 Pfam AAA+ lid domain 440 481 IPR041569 -
Pumo7g00193 529 MobiDBLite consensus disorder prediction 79 98 - -
Pumo7g00193 529 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Pumo7g00193 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 515 IPR027417 -
Pumo7g00193 529 ProSitePatterns AAA-protein family signature. 390 409 IPR003960 GO:0005524|GO:0016887
Pumo7g00193 529 Coils Coil 62 82 - -
Pumo7g00193 529 Gene3D - 239 520 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00193 Pumo-Chr7 2178065 2181931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00193 233 521 Calmodulin-binding Proteins AT3G56690 39.933 1.28e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00193 K07767 - gmx:100787634 941.028