Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo7g00161 | ATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAGCAAGTGATGATGTTTTCAGCCACACTCAGTAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATATATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTACAGCACTATATCAAATTGCAAGAGACAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAAAGTGTCAGCAGAGCTGCAGAGTTGAACAAGTTGCTTGTGGAGTGTAATTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAGGGTTTCAAAGAAGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGGTTTGGCACAAAGGGGCTTGCAATTACTTTTGTGTCCTCTACTGCTGACTCTGAGGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGACATAAAGGAGCTTCCTGAACAAATTGACACTTCCACATATATGCCAAACTGA | 663 | 0.4042 | MRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo7g00161 | 220 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 187 | IPR027417 | - | |
Pumo7g00161 | 220 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 71 | 216 | IPR001650 | - | |
Pumo7g00161 | 220 | Gene3D | - | 52 | 220 | IPR027417 | - | |
Pumo7g00161 | 220 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 2 | 194 | - | - | |
Pumo7g00161 | 220 | CDD | SF2_C_DEAD | 56 | 185 | - | - | |
Pumo7g00161 | 220 | Gene3D | - | 1 | 51 | IPR027417 | - | |
Pumo7g00161 | 220 | Pfam | Helicase conserved C-terminal domain | 69 | 176 | IPR001650 | - | |
Pumo7g00161 | 220 | FunFam | DEAD-box ATP-dependent RNA helicase | 52 | 220 | - | - | |
Pumo7g00161 | 220 | SMART | helicmild6 | 95 | 176 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo7g00161 | Pumo-Chr7 | 1855105 | 1857195 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo7g00161 | 1 | 220 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 94.091 | 2.26e-155 | 432 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo7g00161 | K12812 | - | gmx:100785358 | 435.647 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo7g00161 | 7 | 1855105 | 1857195 | Pumo7g00161 | 7 | 1855105 | 1857195 | ECH |