Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00161 ATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAGCAAGTGATGATGTTTTCAGCCACACTCAGTAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATATATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTACAGCACTATATCAAATTGCAAGAGACAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAAAGTGTCAGCAGAGCTGCAGAGTTGAACAAGTTGCTTGTGGAGTGTAATTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAGGGTTTCAAAGAAGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGGTTTGGCACAAAGGGGCTTGCAATTACTTTTGTGTCCTCTACTGCTGACTCTGAGGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGACATAAAGGAGCTTCCTGAACAAATTGACACTTCCACATATATGCCAAACTGA 663 0.4042 MRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00161 220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 187 IPR027417 -
Pumo7g00161 220 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 71 216 IPR001650 -
Pumo7g00161 220 Gene3D - 52 220 IPR027417 -
Pumo7g00161 220 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 194 - -
Pumo7g00161 220 CDD SF2_C_DEAD 56 185 - -
Pumo7g00161 220 Gene3D - 1 51 IPR027417 -
Pumo7g00161 220 Pfam Helicase conserved C-terminal domain 69 176 IPR001650 -
Pumo7g00161 220 FunFam DEAD-box ATP-dependent RNA helicase 52 220 - -
Pumo7g00161 220 SMART helicmild6 95 176 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00161 Pumo-Chr7 1855105 1857195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00161 1 220 Eukaryotic Initiation Factors Gene Family AT5G11170 94.091 2.26e-155 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00161 K12812 - gmx:100785358 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00161 7 1855105 1857195 Pumo7g00161 7 1855105 1857195 ECH