Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00160 ATGGGGGAATTGAAGGACACCGAGGCTTACGAGGAAGAGCTCATCGACTACGAAGAAGAGGATGAAAAAGCTCCCGATTCTGCTAAACCCGTTGCTGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCAGGATTTGAGCATCCGTCAGAAGTGCAACACGAATGCATCCCTCAGGCAATCTTAGGAATGGATGTCATTTGCCAAGCGAAGTCTGGGATGGGAAAGACTGCTGTGTTTGTTTTGTCGACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCACGAATTTGAGAGATTCAGCACATATCTTCCTGATATCAAGGCTGCTGTTTTCTACGGTGGTGTCAACATCAAGGATTCACAAAGAATTGCTCAAGAATGA 492 0.4573 MGELKDTEAYEEELIDYEEEDEKAPDSAKPVAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKDSQRIAQE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00160 163 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Pumo7g00160 163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 163 IPR014001 -
Pumo7g00160 163 Pfam DEAD/DEAH box helicase 70 158 IPR011545 GO:0003676|GO:0005524
Pumo7g00160 163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 160 IPR027417 -
Pumo7g00160 163 MobiDBLite consensus disorder prediction 1 32 - -
Pumo7g00160 163 Gene3D - 33 163 IPR027417 -
Pumo7g00160 163 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00160 Pumo-Chr7 1852653 1854857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00160 1 155 Eukaryotic Initiation Factors Gene Family AT5G11200 85.897 1.86e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00160 K12812 - gmx:100799082 299.671