Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00158 ATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTCGAGACAGCCGAGGAAGCAGCTAGAGCATATGATGAGGCAGCCATTTTGATGAGTGGAAGAAATGCGAAAACAAACTTCCCAGTTGCTGAAAACCAAATGGGAAATCAAAGTTCTACTACTTCCTCTTCCACTACCACACTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTGACTTGCCTAAGGCTTGACACAGAGAATTCCCACATTGGGGTGTGGCAGAAGCGAGCAGGCCCTCGTTCTGACTCAAACTGGATCATGATGGTTGAGTTGGAAAGGAAGAACAATGAGGGTGATCAGGGTCCTTCTTCTGATGATTCAGAATTGCCTGTTGTTGTTGTTGATACCCCAGAGAAGGTAAAGCCTGAAGAAAGCACTAGCTTAGATGAGGAGCAGAGAATGGCCCTGCAGATGATAGAGGAACTTCTGAATAGGAACTGA 573 0.4747 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVAENQMGNQSSTTSSSTTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELERKNNEGDQGPSSDDSELPVVVVDTPEKVKPEESTSLDEEQRMALQMIEELLNRN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00158 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 149 - -
Pumo7g00158 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pumo7g00158 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pumo7g00158 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pumo7g00158 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pumo7g00158 190 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pumo7g00158 190 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Pumo7g00158 190 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pumo7g00158 190 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pumo7g00158 190 MobiDBLite consensus disorder prediction 139 174 - -
Pumo7g00158 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00158 Pumo-Chr7 1833619 1834605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00158 1 190 AP2-EREBP Transcription Factor Family AT1G15360 62.687 2.27e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g00158 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00158 - - gmx:100796962 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00158 7 1833619 1834605 Pumo7g00158 7 1833619 1834605 ECH