Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00146 ATGGGTCGTGCAAGAATAACCTTGAAACCTATTTCAAATGAGAGATCTCGCAAGACAACTTTCTTGCAGAGAAAGAAAGGACTAATTAAAAAAATCACTGAATTTACCACCATGTGTCCAGTTGAAGCCTGCTTGATTGTGTATGATGACATCAATGGTGATGTTGGACCAGTGACTTGGCCCCAAGACCCCAAATTGGTACGTTCCATCATTGAAAACTATGAGCGTCAAAGTGCTGAGAGACCTTCCAAGACCTTTCATATTCAAGACTTCTTCGAGAATAGGAAGAACATGATTGAAGCTGAGATTTCCAAATTGCATAAACAGGCCAGAGAGATCATGTATCCAACTTGGGATCCAAGTTTGAGTAGTATGGGAGAGGAGCAATTGAGGGCATTCATTGCTAATGTGAATGCTAAGATTGGAGCTTGTGACCAGAGAATTAACATGTTGAAAAATATGAATCAACATGAAGTCAACATGCAAAATATGGCTCAAGCAAGTGCTTCCTCCTCCCATTCAAGCCAACTCAATTTCATGCAAAGCCAAATCACCCCTACTCCTATGGAGCCATTACTTAATGATAATAATGGGAGGGTGAATTTTGCAAATTCAACAAATTCTAGGTCATGGAATTAA 639 0.3975 MGRARITLKPISNERSRKTTFLQRKKGLIKKITEFTTMCPVEACLIVYDDINGDVGPVTWPQDPKLVRSIIENYERQSAERPSKTFHIQDFFENRKNMIEAEISKLHKQAREIMYPTWDPSLSSMGEEQLRAFIANVNAKIGACDQRINMLKNMNQHEVNMQNMAQASASSSHSSQLNFMQSQITPTPMEPLLNDNNGRVNFANSTNSRSWN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00146 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pumo7g00146 212 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Pumo7g00146 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo7g00146 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo7g00146 212 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Pumo7g00146 212 PANTHER MADS BOX PROTEIN 3 136 - -
Pumo7g00146 212 MobiDBLite consensus disorder prediction 190 212 - -
Pumo7g00146 212 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo7g00146 212 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pumo7g00146 212 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00146 Pumo-Chr7 1754407 1755045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00146 1 141 Type I MADS-box Gene Family AT5G55690 34.483 6.57e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo7g00146 SRF-TF 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00146 - - gmx:106799207 287.345