Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00119 ATGGAGGAGTCAGGGGAAAATTGGCCTTCCGATTCTTATTTGGAAGTGGGTGATGATGACGTGAAGGATGATTTATGTTTTGATGATGATGAAGAATTTGGTAGTGGTGATGATGAGGGAGATTCTTTTTCTGGGACCGTAGATCCCATGATGGGCGACACCGACAAAAAACAGAGACAGCGGGAACTCACAGAGAGGTTCCATGCACTTTCAGCCACCATTCCAGGCTTGAAAAAGATGGACAAGACTTCCATCCTGGCCAATGCTAGCAGCTATGTGAAACAACTTGAGCAACGTGTGAGAGAGCTAGAGCAAGAAGTTCAATCCAACGTTGTTTGTAGCAATGAAGGCGCCACCAGCTCTTGCGAAGTGAACTCCAATGGCAATGACTATTACTGTGGTGGTGGATCAAATGAAATTCTTCCCGAGGTCAAAGTAAGAGTGTTACAAAAGGACGTACTCATCATAATCCACTGTGAGAAACAAAAGGGCATCATGCTCAAAATACTTTCCCACCTTGAAAATGTTAATCTCTCTGTGGTCAACAGCAGCGTCTTGCGATTTGGGAAATCCACTCTCGACATCACCATTATTGCTCAGATGGGTGAGGGATACAACATGACGGTGGATAAACTGGTGAAGACCCTCAGAGTAGCCATCTTGACTCAGTAG 672 0.4509 MEESGENWPSDSYLEVGDDDVKDDLCFDDDEEFGSGDDEGDSFSGTVDPMMGDTDKKQRQRELTERFHALSATIPGLKKMDKTSILANASSYVKQLEQRVRELEQEVQSNVVCSNEGATSSCEVNSNGNDYYCGGGSNEILPEVKVRVLQKDVLIIIHCEKQKGIMLKILSHLENVNLSVVNSSVLRFGKSTLDITIIAQMGEGYNMTVDKLVKTLRVAILTQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00119 223 SMART finulus 53 102 IPR011598 GO:0046983
Pumo7g00119 223 MobiDBLite consensus disorder prediction 1 58 - -
Pumo7g00119 223 Gene3D - 55 110 IPR036638 GO:0046983
Pumo7g00119 223 Coils Coil 86 113 - -
Pumo7g00119 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 110 IPR036638 GO:0046983
Pumo7g00119 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Pumo7g00119 223 PANTHER BHLH TRANSCRIPTION FACTOR 58 221 - -
Pumo7g00119 223 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00119 Pumo-Chr7 1412268 1420921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00119 57 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.258 1.63e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00119 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00119 - - gmx:100527052 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04366 4 84675920 84678889 Pumo7g00119 7 1412268 1420921 PCT
Pumo7g00119 7 1412268 1420921 Pumo4g04367 4 84682765 84684930 PCT