Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00118 ATGATGGAGGACTCATGGGAAAACTGGCTCTCTCATCTGGGAATGAATGATGATATTGCCGGCACCAACGCTGTATCCTTTGAAGAGATGGTAAGGTTCAACAATGATATTAGCTCCAATGTTGTAGCAGCTGTCGGGCCAAAACAGGAATACACTGACTCTTATTTGAAGAAGAGCAGCGAAGAAGAATTAGGAAGTTGTTATTGGCGTAAAAGGGGCGTAGAGAACCATGAGTTGGAGGCAAAGGCAAGAGGAACAAAAAGGGCAAGAACCTCTTCTGAGACACAATATCACATAATGTCAGAGAGAAAAAGGAGACAGGATATAGCGGAGAAATTCATAGCACTCTCAGCTACTATACCTGGCTTGAAGAAGATAGATAAGGCTTCTGTACTTGGGGAAGCCATCAACTACATGCGACAACTTCAACAACGTATAGCAGTGCTGGAAAAAGGGACCAATAATAAAAGTATAAAGTCATTGATCATCACGAAATCACGCCTTTGTTCGACGTCATGTGAAACAAACTCTAATGAAGTGCTCCCTGAAGTTGAAGCAAGAGGTTTGGAGAAGGAAGTACTCATTAGAATCTATTGTGAGAAACGAAAGGGCATCATGCTCAAGCTATTGGCCCTACTAAAAGATCTTCATCTCTCAATAGCCAGTAGCAGCGTATTGCCATTTGGAAACTCTATTCTCAACATTATCATAATTGCTCAGATGAGTGAGAAATACAACTTGACGGTGAACGATTTGGTTAAGACCTTGAAGCAGATCTTTTGA 783 0.4151 MMEDSWENWLSHLGMNDDIAGTNAVSFEEMVRFNNDISSNVVAAVGPKQEYTDSYLKKSSEEELGSCYWRKRGVENHELEAKARGTKRARTSSETQYHIMSERKRRQDIAEKFIALSATIPGLKKIDKASVLGEAINYMRQLQQRIAVLEKGTNNKSIKSLIITKSRLCSTSCETNSNEVLPEVEARGLEKEVLIRIYCEKRKGIMLKLLALLKDLHLSIASSSVLPFGNSILNIIIIAQMSEKYNLTVNDLVKTLKQIF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00118 260 SMART finulus 99 148 IPR011598 GO:0046983
Pumo7g00118 260 ProSiteProfiles ACT domain profile. 194 260 IPR002912 -
Pumo7g00118 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Pumo7g00118 260 Gene3D - 89 155 IPR036638 GO:0046983
Pumo7g00118 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 154 IPR036638 GO:0046983
Pumo7g00118 260 PANTHER BHLH TRANSCRIPTION FACTOR 15 259 - -
Pumo7g00118 260 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00118 Pumo-Chr7 1383625 1387376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00118 1 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.264 4.45e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00118 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00118 - - gmx:100778916 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04367 4 84682765 84684930 Pumo7g00118 7 1383625 1387376 PCT