Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00117 ATGGAGGAGTCATGGGAGAATTGGCATCTTCACATGGAAATGGATTGCGAGAACGATTTCTTAAACAAGTGTCACAGTGCTGCTGACGATGACGAGTTCCTCAGAGACATCCTTCAGCAACCACCACCTGCTGCGGCTTTCTCTTCCGAAAGCGAAAGTGATCACTCGTTACGCGCTGTCCAAAATCAAAACGACGGCGCCGTTTTCTCACCCAGGAATTACCTCGTCAAAAGCAACAGCTCCAACTCTTTAATCTCTCAAAACGCTTCCAAACGCCCTCGTCGTTTGTCTTCTCCCAGGACTTACATTCTCTCCTTCGATAACTCAACCATGGTACCGGCCACACCCGAACCCTGCCTCCGCTCTTCCAATAATTCACCTTTACCTGCGAAACGGGCCTTGGAAAGCCCAGGCCCAGAATCGAGAAGGCCCAATCAAGGAGCTAAGAAGACCAGAACCTCTTCTCAGACCATCGATCACATAATGGCGGAGAGACGAAGGAGACAGGAACTCACGGAGAGGTTCATAGCACTCTCAGCCACCATTCCCGGCTTGAACAAGACGGACAAGGCTTCTGTACTTCGAGCAGCAATCGATTATGTGAAAGAGCTTCAAGAAAGGGTACAGGAACTAGAGAAACAAGACAAAAAAAGGAATGCAGAGTCAGTAATACTCATCAAGAAACCCAATCCAAGTGGAAATAATGAAGACACCACCTTCACTGAAACGAACTGTAGCATCCTTCCCGAGATGGAAGCAAGAGTGTTGGGGAAGGAGATGCTCATTGAGATCCACTGTGAGAAAGAGAATGGTGTTGAGCTTAAAATATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACCGGAAGCAGTGTCTTGCCATTTGGGAATTCTGCTCTCTGCATTACCATCACAGCTCAGATGGGTGACGAGTACCAAATGACAGTGAATGATCTAGTGAAAAACCTTAGACAGGTGCTCTCAAAATCACATGTGCTAAGCGACAGTGATCCGTACTAG 1020 0.4745 MEESWENWHLHMEMDCENDFLNKCHSAADDDEFLRDILQQPPPAAAFSSESESDHSLRAVQNQNDGAVFSPRNYLVKSNSSNSLISQNASKRPRRLSSPRTYILSFDNSTMVPATPEPCLRSSNNSPLPAKRALESPGPESRRPNQGAKKTRTSSQTIDHIMAERRRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKELQERVQELEKQDKKRNAESVILIKKPNPSGNNEDTTFTETNCSILPEMEARVLGKEMLIEIHCEKENGVELKILDHLENLHLCVTGSSVLPFGNSALCITITAQMGDEYQMTVNDLVKNLRQVLSKSHVLSDSDPY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00117 339 Gene3D - 153 224 IPR036638 GO:0046983
Pumo7g00117 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Pumo7g00117 339 MobiDBLite consensus disorder prediction 113 130 - -
Pumo7g00117 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 227 IPR036638 GO:0046983
Pumo7g00117 339 Coils Coil 194 221 - -
Pumo7g00117 339 Pfam Helix-loop-helix DNA-binding domain 160 205 IPR011598 GO:0046983
Pumo7g00117 339 SMART finulus 161 210 IPR011598 GO:0046983
Pumo7g00117 339 MobiDBLite consensus disorder prediction 113 160 - -
Pumo7g00117 339 PANTHER BHLH TRANSCRIPTION FACTOR 44 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00117 Pumo-Chr7 1365240 1368053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00117 151 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.739 1.90e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00117 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00117 - - gmx:100778376 579.711