Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00115 ATGGGGGAGCCATGCCAAAAATATTGGTTTTCTGATATGGAAATACAGGATTATGATTTCTTTAACCAAAGCCACAAGATTGAGTCACTTGATGATGAGGATCAGATCTTTCGAGAGATCATGCATCAGCCAGCTTTTTCTTCTGAAAGTGAAACTCACTCTCCCAAAATTCAAAGTAAATCAATCCACGGTGGTAGTAGTGCTTATACTTACACAGCCCTCGCCAACAACAAGAGTAGCAATAGCAACCTTGTGATGAAGAGCAACAGCTCCAACTTCATCTTCTCATCATCACAACATCATGCACCAGAGAAACCTGCCACAGCCATTTCCCCAACTGCATACATTCTTTCTTTCGATGACTCCACCGTAGTCGCGGCTACCCGCCAAACCTACGGTGGAAAACAGCCCTACCAAGAGGAAGTAGTAGTAGGGAGTGGTGGTGCTTCTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGACGTTGAACCTAAGGCCAACCCAACACCAAGGAAAAGTAGAAGCTCTGCGGAGACACTAGACCATATAATGACAGAGAGAAAAAGGAGACGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGCTTAAAGAAGATTGACAAGGCCACTATACTTAGTGAAGCAATCACTCATGTGAAAAGACTTAAAGAACGTGTAAGGGAGCTAGAAGAACAATGTAAGAAGACAAGGGTAGAGTCAGTGTCATTTGTTCATCAGAGATCCCACATTACAACTGACAAAGGCACCACCTCTGGTGCAATGAACTCTGATGAGTGCTGTAGAACCGATGAAGCACTCCCTACAGTTGAAGCAAGAGTATTTAAAAAAGATGTACTCCTTCGGATTCACTGCAAGATACAAAGTGGCATTTTGATCAAAATTTTGGACCATCTTAATAGTCTCGATCTCTCCACAATCAGCAACAGTGTAATGCCATTTGGGAGTTCAACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAACGTAACAATAAATGATCTAGTGAAAAACCTGAGAACGGCTCTCTTGCAGTCATCTGAAGTACAACAATGA 1095 0.4283 MGEPCQKYWFSDMEIQDYDFFNQSHKIESLDDEDQIFREIMHQPAFSSESETHSPKIQSKSIHGGSSAYTYTALANNKSSNSNLVMKSNSSNFIFSSSQHHAPEKPATAISPTAYILSFDDSTVVAATRQTYGGKQPYQEEVVVGSGGASLPSKGVSEKHDVEPKANPTPRKSRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILSEAITHVKRLKERVRELEEQCKKTRVESVSFVHQRSHITTDKGTTSGAMNSDECCRTDEALPTVEARVFKKDVLLRIHCKIQSGILIKILDHLNSLDLSTISNSVMPFGSSTLDISIIAQMGDKFNVTINDLVKNLRTALLQSSEVQQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00115 364 Gene3D - 168 243 IPR036638 GO:0046983
Pumo7g00115 364 SMART finulus 183 232 IPR011598 GO:0046983
Pumo7g00115 364 PANTHER BHLH TRANSCRIPTION FACTOR 41 358 - -
Pumo7g00115 364 MobiDBLite consensus disorder prediction 147 187 - -
Pumo7g00115 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Pumo7g00115 364 Coils Coil 216 243 - -
Pumo7g00115 364 Pfam Helix-loop-helix DNA-binding domain 182 226 IPR011598 GO:0046983
Pumo7g00115 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 252 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00115 Pumo-Chr7 1343797 1346231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00115 173 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.196 5.59e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00115 HLH 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00115 - - gmx:100777846 588.186