Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00114 ATGAACGGCGAAATCTTCTTACACGCGCCCACAACCACCACCACTAACTTTTTGCTTCCGAAACCAGAAACGGCGTCGTCAGAGACGCTGGACCCGTCACAGAAGCTACGCTACGAAACGGCGCTCGAAGGAATCGCCGCGGTCGTGGGAGAACACGTTCTCTTCGGAACGACGTCGTCGTCGCAGGTTTCGGAGCCACCGAAGAAGAAAGGTGGCGTGTCGTCGTCGTCGGCGGCGAACAAGACCTACCGAGGAGTGAGGAAGCGACCATGGGGGAGGTGGTCGGCGGAGATACGCGACCGCATCGGGCGGTGCCGCCACTGGCTGGGGACCTTCGACACGGCGGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGCCTGAGAGGTGCGAAGGCGAGGACCAACTTCAAGATACCCTCGGTGTTGCCACTTTCTCCCTCTTCGGAAGGGGTTCATGGTGGTACTCTGAAGCCGAAAACCGCGCGAAACAACGCTAGGAAGTGTTCTTCTGTGGAACAATTGTTCAGTGGGGTGCCTCAAGTTCGAAGAGAAAACGGTGGTGGCGAGAATGGGAATGTGGAGGTGGATTTGAAGCTTGGTGTGAATAACTTTGGTGTTACAAGCACTAGAATGGTGGTTTAG 648 0.5802 MNGEIFLHAPTTTTTNFLLPKPETASSETLDPSQKLRYETALEGIAAVVGEHVLFGTTSSSQVSEPPKKKGGVSSSSAANKTYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGVHGGTLKPKTARNNARKCSSVEQLFSGVPQVRRENGGGENGNVEVDLKLGVNNFGVTSTRMVV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00114 215 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677
Pumo7g00114 215 Coils Coil 115 135 - -
Pumo7g00114 215 MobiDBLite consensus disorder prediction 58 82 - -
Pumo7g00114 215 CDD AP2 83 140 IPR001471 GO:0003700|GO:0006355
Pumo7g00114 215 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Pumo7g00114 215 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Pumo7g00114 215 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pumo7g00114 215 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Pumo7g00114 215 MobiDBLite consensus disorder prediction 58 86 - -
Pumo7g00114 215 Pfam AP2 domain 83 131 IPR001471 GO:0003700|GO:0006355
Pumo7g00114 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 69 163 - -
Pumo7g00114 215 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Pumo7g00114 215 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00114 Pumo-Chr7 1329628 1330275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00114 12 145 AP2-EREBP Transcription Factor Family AT1G80580 56.944 1.52e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g00114 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00114 - - gmx:102660200 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00114 7 1329628 1330275 Pumo7g00114 7 1329628 1330275 ECH