Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00107 ATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAGACTAGAATATGGCTAGGAACCTTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGGCTCATGTGTGGGCCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAATCACATTCATCCTCATCCAAGCTTCTCTCTGCCACTTTAACGGCTAAGTTACATAAGTGTCACATGGCCTCTCTTTCCCTTCAAATGGCCAAGCAGAAACCACCACAGAACAAAGAGCCTCAACCATCACAAGGGTCCAATCCATTTGCCTCTGCCAATGCCATTGCTGGATCAAGCGCTGACACTGGTTTTAGATGGCCAGATAACAGACATGAGGAATTCAGATGGTTTGAAGGGAATTGGGTTGGCATGGAAGGCCAGGTTCTACTATCAGCTGATTGCAACTATTCAGCATCTGATTTTGGTATTCCTTTTTTCTTTGTCTCTGTGAGTGTCGCGGACCAGAATTATTCAGTGTGGGATTCCGAAGAATTTGAACTTAGCTATCTAGTCAAATAG 606 0.462 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNESHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKPPQNKEPQPSQGSNPFASANAIAGSSADTGFRWPDNRHEEFRWFEGNWVGMEGQVLLSADCNYSASDFGIPFFFVSVSVADQNYSVWDSEEFELSYLVK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00107 201 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pumo7g00107 201 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pumo7g00107 201 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pumo7g00107 201 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pumo7g00107 201 MobiDBLite consensus disorder prediction 98 121 - -
Pumo7g00107 201 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Pumo7g00107 201 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pumo7g00107 201 PIRSF PTI6 138 198 IPR017392 GO:0003700
Pumo7g00107 201 PIRSF PTI6 1 96 IPR017392 GO:0003700
Pumo7g00107 201 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pumo7g00107 201 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Pumo7g00107 201 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pumo7g00107 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00107 Pumo-Chr7 1249373 1254701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00107 1 159 AP2-EREBP Transcription Factor Family AT5G25190 61.212 5.50e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g00107 AP2 8.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00107 - - gmx:100777851 295.049