Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00101 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCTGAAAATTTGAACATCATCACATTTTCAGACACTTTGCCGTGCCTAAAATCTTCCATAGACACTCAAACAAAGATGAATCACACAGAAAAGGAAGATCAAAAACACCCACATGACTCAGTTCCTCGTGTTTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACAAATTTCTCTGAAAACTCAACAGAATCTAGTCAGGGAAATGAACTGGATCCTCGAGTTTTCTCATGCAATTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCTCTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTATGGCAAGAAGAGGATACAAAGCTGGTGCAGCAGATTTTGGACACACATACTCCAACATGACTTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCCATGATTAACAAGCCTTCTTATCAAACACCCTTTTTTGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAACCTTTGGATTCACAGCCAGCAGTTGGAAACTTTCGTGTGGGGGCAGAAACTGAGTCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGTTGGTGACAGAGGGGTTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 780 0.4231 MDLQRQEPCPSENLNIITFSDTLPCLKSSIDTQTKMNHTEKEDQKHPHDSVPRVLLDLSLSNKDSGDDDSKPELNLLNCFHTNFSENSTESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTMARRGYKAGAADFGHTYSNMTFLPSHGLYNKALGIQVHSMINKPSYQTPFFGLCRSNGWQRQPLDSQPAVGNFRVGAETESSLADSVPKLGKFSTRLVTEGFGGYCFGSITHLKSKQQEKLQKLDLSLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00101 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 259 IPR044246 GO:0009788
Pumo7g00101 259 Gene3D Classic Zinc Finger 80 142 - -
Pumo7g00101 259 FunFam Zinc finger protein 2 80 148 - -
Pumo7g00101 259 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Pumo7g00101 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Pumo7g00101 259 SUPERFAMILY beta-beta-alpha zinc fingers 99 130 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00101 Pumo-Chr7 1205289 1206565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00101 1 259 C2H2 Transcription Factor Family AT5G10970 38.652 8.83e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo7g00101 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00101 - - gmx:102666245 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00101 7 1205289 1206565 Pumo7g00101 7 1205289 1206565 ECH