Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00096 ATGGGTTGCTCTGTCCATGATATTTTCTCCTGCAGTGAAGAGGGTGTTGTTCCAGCTGAGCCAGCTGCTGCCATTCCAGGCGAACCAATGGATATCATGACTGCCTTACAACTTGTGCTCAGGAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCTGCAAAAGTGATCGAGAAGCATGCTGCACAACTGTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTTGTTAAGGCTCTTTGTGCAGAGCATAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTTGGTGAGGAGCATGAAGCCTATAACGTTGTTCTGCAGCATGTGAAATCTCAATGA 450 0.4733 MGCSVHDIFSCSEEGVVPAEPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00096 149 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 35 128 IPR004038 -
Pumo7g00096 149 SUPERFAMILY L30e-like 29 147 IPR029064 -
Pumo7g00096 149 ProSitePatterns Ribosomal protein S12e signature. 35 53 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pumo7g00096 149 Gene3D - 18 149 IPR029064 -
Pumo7g00096 149 FunFam 40S ribosomal protein S12 16 149 - -
Pumo7g00096 149 PANTHER 40S RIBOSOMAL PROTEIN S12 24 148 - -
Pumo7g00096 149 PRINTS Ribosomal protein S12E family signature 53 69 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pumo7g00096 149 PRINTS Ribosomal protein S12E family signature 39 52 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pumo7g00096 149 PRINTS Ribosomal protein S12E family signature 94 115 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pumo7g00096 149 PRINTS Ribosomal protein S12E family signature 119 132 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00096 Pumo-Chr7 1152940 1155105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00096 25 149 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 5.47e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00096 K02951 - gmx:100305687 259.61