LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g00083	ATGGAAACTGCTAGACAGATAAGGAGGTATTCCTGGCGGTCTCTATGTAATTTCTTCAAAATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTGTTCAATGCCATCAAGCTCAAGGGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCTATTCCTCTTCCTGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAGGCTAGGAGTGAAGAAGAGTTCAGATGGACTAAAGACATTTGGAAGATCACTAAAGACTGGAGTGACTACTTGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCAGAGAAAAAAGTATTTGATCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTGTGCATTGTTTCTGTAGCATGCGATCCCTTCTTCTTTTACCTTCCTTATTTCAATCACAAATCATTTTGCCTCGCCATAGATAACAACCTAGCAAGTTTTGCTGTCACAACGAGAACAATATGTGATTTCATTTATCTCCTCCGCATAAGTTTTCAATTCCGCACTGCTTACATTGCACCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTTATAGATCCTACAAAGATTGCCAAGAGATATTTACGACGTTACTTCATCATTGACTTCATTTCTGTGCTGCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAAATCAGGACGTGCAGAGGTATTGGAAACAAAAACGGCACTGTTGAGAATTGTGATCCTGCAATATTTTCCAAGATTTCTACGCTTTTTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTGTCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGGATGCTTGCAAAGAAGTTGAAGGATGCAATACACATTTCTTATACTGTGGGAATTCGAACAAGCATATGTCAGGGTATGATAGTTGGAGAAATGTCAGTGAGACTGTTCTGAAAAGTCGTTGTTTTGTTGAGGATGATGCCTCAGAATTTAACTATGGAATCTTCTCTCAAGCTATACAATCTGATATTGTTGCTTCCGTAGAAGTTTTTCCTAAATTCTGTTACTGTTTGTGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCAGAGCTAAGGGAAAGGGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGAGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCACCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGCTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGCACATACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCATTGGACCCCAAATCTGCTGCTAGCTTGCCAACATCCACAAGGACAGTCAAAGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATTCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCGCAGCAGTGGAGAACCTGGGCTGCTATCTACATTCAAGCTGCGTGGAGGCGGCATTGCAGGAGAAAGATTGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTCTGTGACTCTGATTATGATAACTCTGATGATTCAGCAAGGGCCTTGGTCAGGCGTAGAGATACTTCTTTTTCCTCTTCTAGGTTTGGACTTGGAACAACCGTCTACGCTTCTCGCTTTGCTGCTAATGCACTTCGTGGTCATAGGCTTCGTGGTTCAAGTTCCAGGGACATGATCAAACTCCAAAAGCCCCCGGAACCTGACTTCACTGATCTTGATGAAAACTGA	2319	0.426	METARQIRRYSWRSLCNFFKMFDSGYKSQYIGGQKEKFVRLDDLDSNCSMPSSSRGMKKLRFNLDSLPIPLPGRGRKRASKSFRLGVKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIVSVACDPFFFYLPYFNHKSFCLAIDNNLASFAVTTRTICDFIYLLRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFIIDFISVLPIPQIVVWKYLYKSGRAEVLETKTALLRIVILQYFPRFLRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKDACKEVEGCNTHFLYCGNSNKHMSGYDSWRNVSETVLKSRCFVEDDASEFNYGIFSQAIQSDIVASVEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAASLPTSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEEFCDSDYDNSDDSARALVRRRDTSFSSSRFGLGTTVYASRFAANALRGHRLRGSSSRDMIKLQKPPEPDFTDLDEN	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g00083	772	FunFam	Cyclic nucleotide-gated ion channel 1	459	523	-	-
	Pumo7g00083	772	ProSiteProfiles	cAMP/cGMP binding motif profile.	532	629	IPR000595	-
	Pumo7g00083	772	MobiDBLite	consensus disorder prediction	750	772	-	-
	Pumo7g00083	772	CDD	CAP_ED	532	663	IPR000595	-
	Pumo7g00083	772	Gene3D	-	134	457	-	-
	Pumo7g00083	772	Gene3D	Helix hairpin bin	459	523	-	-
	Pumo7g00083	772	Pfam	Ion transport protein	132	459	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Pumo7g00083	772	SUPERFAMILY	Voltage-gated potassium channels	125	454	-	-
	Pumo7g00083	772	ProSiteProfiles	IQ motif profile.	668	697	IPR000048	GO:0005515
	Pumo7g00083	772	Pfam	Cyclic nucleotide-binding domain	553	642	IPR000595	-
	Pumo7g00083	772	SUPERFAMILY	cAMP-binding domain-like	462	652	IPR018490	-
	Pumo7g00083	772	SMART	cnmp_10	532	663	IPR000595	-
	Pumo7g00083	772	FunFam	Cyclic nucleotide-gated ion channel 1	530	648	-	-
	Pumo7g00083	772	MobiDBLite	consensus disorder prediction	750	766	-	-
	Pumo7g00083	772	Gene3D	Jelly Rolls	530	650	IPR014710	-
	Pumo7g00083	772	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	114	766	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo7g00083	Pumo-Chr7	987114	993936	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo7g00083	26	766	Ion Channels	AT1G15990	68.750	0.0	1012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g00083	K05391		-	gmx:100810453	1431