Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00055 ATGGATGGTATTCATGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCACCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGACTGCACCATATGAGCAATGGGAATGGGATTGATGATGATCAGAATGATGGCGGTGATGCTAACTGTGGTGGAAGTGAAAGTGTGGAAGGTGAAGTCCCCTCCAACCATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGCGAAATACCTCCAATTATGCCTGCCATGCCAGTATCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACGTCTTCCAAGTCCAATCATGATGAATCTACATCAACTGCAACAAATTGGGGGACGAATGAAAACTGGACGGCAGACAATAATGGATCCCAGCAGCAAGATATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTGTCAAGGGCGGCACCCATATCTGGACATAATTCCTCGTTTGTCAAGAATGAGAATAAAAGTTTAGAGGCCAACCGGATAGTCCATAGAGTTGCAGGAGAAGCTGATGATTCCTCGTGA 915 0.4579 MDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDDDQNDGGDANCGGSESVEGEVPSNHGNLPDNHAVIMDQGGDAGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPIMPAMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESTSTATNWGTNENWTADNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPISGHNSSFVKNENKSLEANRIVHRVAGEADDSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00055 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Pumo7g00055 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Pumo7g00055 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 268 IPR000679 GO:0006355|GO:0043565
Pumo7g00055 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Pumo7g00055 304 MobiDBLite consensus disorder prediction 32 74 - -
Pumo7g00055 304 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Pumo7g00055 304 Gene3D - 216 278 IPR013088 GO:0006355|GO:0008270
Pumo7g00055 304 Pfam CCT motif 150 192 IPR010402 GO:0005515
Pumo7g00055 304 MobiDBLite consensus disorder prediction 186 216 - -
Pumo7g00055 304 CDD ZnF_GATA 225 285 IPR000679 GO:0006355|GO:0043565
Pumo7g00055 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Pumo7g00055 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 284 - -
Pumo7g00055 304 Pfam tify domain 87 116 IPR010399 -
Pumo7g00055 304 SMART tify_2 82 117 IPR010399 -
Pumo7g00055 304 PANTHER GATA TRANSCRIPTION FACTOR 28 26 284 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00055 Pumo-Chr7 756801 760800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00055 1 303 Tify Gene Family AT1G51600 62.092 6.55e-137 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo7g00055 CCT 8.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00055 - - pvu:PHAVU_008G254600g 576.63